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A

a0 - Variable in class org.hkijena.jipipe.ui.grapheditor.general.connections.RectangularLine
 
a1 - Variable in class org.hkijena.jipipe.ui.grapheditor.general.connections.RectangularLine
 
AbsoluteColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a abs(x) function
AbsoluteColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.AbsoluteColumnOperation
 
absoluteToImageJRelative(Path) - Static method in class org.hkijena.jipipe.utils.PathUtils
 
AbstractExpressionParameter - Class in org.hkijena.jipipe.extensions.expressions
A parameter that contains an expression.
AbstractExpressionParameter() - Constructor for class org.hkijena.jipipe.extensions.expressions.AbstractExpressionParameter
 
AbstractExpressionParameter(String) - Constructor for class org.hkijena.jipipe.extensions.expressions.AbstractExpressionParameter
 
AbstractExpressionParameter(AbstractExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.expressions.AbstractExpressionParameter
 
AbstractJIPipeParameterCollection - Class in org.hkijena.jipipe.api.parameters
AbstractJIPipeParameterCollection() - Constructor for class org.hkijena.jipipe.api.parameters.AbstractJIPipeParameterCollection
 
AbstractPathImageJDataExporterUI - Class in org.hkijena.jipipe.api.compat.ui
Exporter UI that changes the activation state and the name (based on a path)
AbstractPathImageJDataExporterUI(JIPipeWorkbench, ImageJDataExportOperation) - Constructor for class org.hkijena.jipipe.api.compat.ui.AbstractPathImageJDataExporterUI
 
AbstractPathImageJDataImporterUI - Class in org.hkijena.jipipe.api.compat.ui
Importer UI that represents the name as path
AbstractPathImageJDataImporterUI(JIPipeWorkbench, ImageJDataImportOperation) - Constructor for class org.hkijena.jipipe.api.compat.ui.AbstractPathImageJDataImporterUI
 
accept(JIPipeWorkbench) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDefaultParameterCollectionContextAction
 
accept(Object) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDummyParameterCollection
 
accept(JIPipeWorkbench) - Method in class org.hkijena.jipipe.api.parameters.JIPipeReflectionParameterCollectionContextAction
 
accept(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.general.layout.MSTGraphAutoLayoutMethod
 
accept(JIPipeGraphCanvasUI) - Method in class org.hkijena.jipipe.ui.grapheditor.general.layout.SugiyamaGraphAutoLayoutMethod
 
accepts(JIPipeData) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Returns true if the slot can carry the provided data.
accepts(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Returns true if the slot can carry the provided data.
acceptsTrivially(JIPipeData) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Returns true if the slot can carry the provided data.
acceptsTrivially(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Returns true if the slot can carry the provided data.
AccumulateFunction - Class in org.hkijena.jipipe.extensions.expressions.functions.statistics
 
AccumulateFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.statistics.AccumulateFunction
 
Action(Component, int, Insets) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Action
 
Action(List<Component>, int, Insets) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Action
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.parameters.ExpressionTesterJIPipeMenuExtension
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.parameters.ParameterTesterJIPipeMenuExtension
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.plots.NewPlotJIPipeMenuExtension
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.extensions.tables.NewTableJIPipeMenuExtension
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.components.AdvancedFileChooser
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.components.ColorChooserButton
 
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.components.html.HTMLEditor.StrikeThroughAction
Toggles the strikethrough attribute.
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.components.html.HTMLEditor.SubscriptAction
Toggles the strikethrough attribute.
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.components.html.HTMLEditor.SuperscriptAction
Toggles the strikethrough attribute.
actionPerformed(ActionEvent) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
ActivateAndApplyUpdateSiteRun - Class in org.hkijena.jipipe.ui.extensions
 
ActivateAndApplyUpdateSiteRun(JIPipeModernPluginManager, List<UpdateSite>) - Constructor for class org.hkijena.jipipe.ui.extensions.ActivateAndApplyUpdateSiteRun
 
ActivateDependenciesConfirmationDialog - Class in org.hkijena.jipipe.ui.extensions
 
ActivateDependenciesConfirmationDialog(Component, JIPipeModernPluginManager, JIPipeExtension, Set<JIPipeDependency>, Set<JIPipeImageJUpdateSiteDependency>) - Constructor for class org.hkijena.jipipe.ui.extensions.ActivateDependenciesConfirmationDialog
 
activateExtension(JIPipeExtension) - Method in class org.hkijena.jipipe.ui.extensions.JIPipeModernPluginManager
 
ActivateUpdateSiteRun - Class in org.hkijena.jipipe.ui.ijupdater
 
ActivateUpdateSiteRun(FilesCollection, List<UpdateSite>) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ActivateUpdateSiteRun
 
AdaptiveParameterBuilder - Class in org.hkijena.jipipe.ui.parameters
 
AdaptiveParameterBuilder(JIPipeWorkbench, JIPipeParameterCollection) - Constructor for class org.hkijena.jipipe.ui.parameters.AdaptiveParameterBuilder
 
AdaptiveParameterBuilder.ConditionValuePair - Class in org.hkijena.jipipe.ui.parameters
 
AdaptiveParameterBuilder.ConditionValuePairUI - Class in org.hkijena.jipipe.ui.parameters
 
add(JIPipeDataTableMetadataRow) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTableMetadata
 
add(int, JIPipeDataTableMetadataRow) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTableMetadata
 
add(JIPipeProject, JIPipeDataSlot, JIPipeDataTableMetadata) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
add(JIPipeParameterCollection, String, JIPipeParameterTree.Node) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree
Adds a new JIPipeParameterCollection into this collection.
add(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageSliceIndex
Adds the value to all components
add(Ribbon.Action) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Band
 
add(Ribbon.Band) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Task
 
add(JIPipeProject, JIPipeDataTable) - Method in class org.hkijena.jipipe.ui.datatable.JIPipeExtendedMultiDataTableModel
add(Component) - Method in class org.hkijena.jipipe.utils.MenuManager
 
add(Point) - Method in class org.hkijena.jipipe.utils.PointRange
Adds the point's x and y coordinates to all points
ADD_MASK_QUALIFIER - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
Conversion rules that convert any input data type into their respective mask data type
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.FancyPasswordField
Adds a listener for when the search text changes
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.FancyTextField
Adds a listener for when the search text changes
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.PathEditor
Adds a listener for when the path property changes
addActionListener(Runnable) - Method in class org.hkijena.jipipe.ui.components.ribbon.CheckBoxAction
 
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.ribbon.CheckBoxAction
 
addActionListener(Runnable) - Method in class org.hkijena.jipipe.ui.components.ribbon.LargeButtonAction
 
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.ribbon.LargeButtonAction
 
addActionListener(Runnable) - Method in class org.hkijena.jipipe.ui.components.ribbon.LargeToggleButtonAction
 
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.ribbon.LargeToggleButtonAction
 
addActionListener(Runnable) - Method in class org.hkijena.jipipe.ui.components.ribbon.SmallButtonAction
 
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.ribbon.SmallButtonAction
 
addActionListener(Runnable) - Method in class org.hkijena.jipipe.ui.components.ribbon.SmallToggleButtonAction
 
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.ribbon.SmallToggleButtonAction
 
addActionListener(ActionListener) - Method in class org.hkijena.jipipe.ui.components.search.SearchTextField
Adds a listener for when the search text changes
addAfterLastOfType(Component, Class<? extends Component>) - Method in class org.hkijena.jipipe.utils.MenuManager
 
addAlgorithm(JsonNodeInfo) - Method in class org.hkijena.jipipe.JIPipeJsonExtension
Adds a new node type of specified type
AddAlgorithmSlotPanel - Class in org.hkijena.jipipe.ui.components
UI that adds slots to an algorithm
AddAlgorithmSlotPanel(JIPipeGraphNode, JIPipeSlotType, JIPipeHistoryJournal) - Constructor for class org.hkijena.jipipe.ui.components.AddAlgorithmSlotPanel
 
addAll(Collection<? extends JIPipeDataTableMetadataRow>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTableMetadata
 
addAll(int, Collection<? extends JIPipeDataTableMetadataRow>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTableMetadata
 
addAll(Ribbon.Action...) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Band
 
addAll(Ribbon.Band...) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Task
 
addAndModifyRow() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a new row and returns a ResultsTableData.RowBuilder for setting values conveniently
addAnnotation(Annotation) - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
 
addAnnotationColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
Adds a new column that contains annotation data and returns its index- If the column already exists, its index is returned.
AddAnnotationColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.annotations
Algorithm that integrates columns
AddAnnotationColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.AddAnnotationColumnsAlgorithm
Creates a new instance
AddAnnotationColumnsAlgorithm(AddAnnotationColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.AddAnnotationColumnsAlgorithm
Creates a copy
addAnnotationIfEnabled(Collection<JIPipeTextAnnotation>, String) - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.optional.OptionalAnnotationNameParameter
Adds the annotation with given value of the parameter is enabled
addAnnotationIfEnabled(Collection<JIPipeTextAnnotation>, String[]) - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.optional.OptionalAnnotationNameParameter
Adds the annotation with given value of the parameter is enabled
addAnnotationIfEnabled(Collection<JIPipeTextAnnotation>, Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.optional.OptionalAnnotationNameParameter
Adds the annotation with given value of the parameter is enabled
addAnnotationIfEnabled(Collection<JIPipeDataAnnotation>, JIPipeData) - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.optional.OptionalDataAnnotationNameParameter
Adds the annotation with given value of the parameter is enabled
addAnnotationToAllData(JIPipeTextAnnotation, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Deprecated.
use addTextAnnotationToAllData()
addBand(String) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Task
 
addBand(String, String) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Task
 
AddBookmarkNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.general.contextmenu
 
AddBookmarkNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.general.contextmenu.AddBookmarkNodeUIContextAction
 
addBorder(ImagePlus, int, int, int, int, BorderMode, double, Color, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.AddBorder2DAlgorithm
 
AddBorder2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
 
AddBorder2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.AddBorder2DAlgorithm
 
AddBorder2DAlgorithm(AddBorder2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.AddBorder2DAlgorithm
 
addButton(String, Icon, Consumer<SearchTextField>) - Method in class org.hkijena.jipipe.ui.components.search.SearchTextField
 
addButton(String, ActionListener) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
addCategories(String...) - Method in class org.hkijena.jipipe.api.JIPipeMetadata
 
addCategory(String) - Method in class org.hkijena.jipipe.api.JIPipeMetadata
 
addChild(String, JIPipeParameterTree.Node) - Method in class org.hkijena.jipipe.api.parameters.JIPipeParameterTree.Node
 
addChoosableFileFilter(FileNameExtensionFilter) - Method in class org.hkijena.jipipe.ui.components.AdvancedFileChooser
 
addColumn() - Method in class org.hkijena.jipipe.extensions.parameters.api.matrix.Matrix2D
Adds a new column
addColumn(ParameterTable.ParameterColumn, Object) - Method in class org.hkijena.jipipe.extensions.parameters.library.table.ParameterTable
Adds a new column to the table
addColumn(String, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a column with the given name.
addColumn(String, TableColumn, boolean) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a column with the given name.
addColumn(Component) - Method in class org.hkijena.jipipe.ui.components.FormPanel.GroupHeaderPanel
Adds an additional component on the right hand side
addColumns(Collection<ResultsTableData>, boolean, TableColumnNormalization) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds columns from another table
addCompartment(String) - Method in class org.hkijena.jipipe.api.JIPipeProject
Adds a new project compartment
addCompartment(JIPipeProjectCompartment, UUID) - Method in class org.hkijena.jipipe.api.JIPipeProject
Adds an existing compartment instance
addContent(GraphNodeParameterReference) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
Adds a new element into the group.
addContent(Collection<GraphNodeParameterReference>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroup
Adds multiple elements.
addCustomEntriesToTable(UIDefaults) - Method in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Add this theme's custom entries to the defaults table.
addCustomEntriesToTable(UIDefaults) - Method in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
Add this theme's custom entries to the defaults table.
addData(JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Adds a data row
addData(JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Adds a data row
addData(JIPipeDataSlot, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Copies the source slot into this slot.
addData(JIPipeVirtualData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Adds data as virtual data reference
addData(JIPipeVirtualData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Adds data as virtual data reference
addData(JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Adds data as virtual data reference
addEmptySlot(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Ensures that the specified slot is registered to the data batch
addEntry(UserFriendlyErrorUI.ErrorEntry) - Method in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI
Adds an entry to the UI
addEscapeListener(JDialog) - Static method in class org.hkijena.jipipe.utils.UIUtils
Makes a JDialog close when the escape key is hit
addFillerGridBagComponent(Container, int, int) - Static method in class org.hkijena.jipipe.utils.UIUtils
Equivalent of Box.verticalGlue() for GridBagLayout
addFirst(Component) - Method in class org.hkijena.jipipe.utils.MenuManager
 
addFromAnnotations(Class<? extends JIPipeGraphNode>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds slots from parameter annotations (with autoCreate)
addFromTable(JIPipeDataTable, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Merges the data from the source table into the current one
addFromTemplate(JIPipeParameterCollection) - Method in class org.hkijena.jipipe.extensions.parameters.library.collections.ParameterCollectionList
 
addGroupHeader(String, Icon) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a group header
addGroups(Collection<GraphNodeParameterReferenceGroup>) - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroupCollection
Adds multiple groups
addInheritanceConversion(JIPipeDataInfo, JIPipeDataInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer.Builder
 
addInheritanceConversion(Class<? extends JIPipeData>, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer.Builder
 
addInputData(JIPipeDataSlot, int) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Adds the data row of a given slot.
addInputData(JIPipeDataSlot, Collection<Integer>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Adds the data row of a given slot.
addInputSlot(String, String, Class<? extends JIPipeData>, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Adds a new input slot
addInputSlot(String, String, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an input slot
addInputSlot(String, String, Class<? extends JIPipeData>, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an input slot
addInputSlot(String, String, Class<? extends JIPipeData>, boolean, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an input slot
addInputSlotForModuleItem(ModuleItem<?>, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.extensions.imagej2.ImageJ2OpNodeInfo
 
addItem(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.IJProgressAdapter
 
addItem(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeProgressAdapter
 
addItem(Object) - Method in class org.hkijena.jipipe.ui.ijupdater.ProgressAdapter
 
AdditionFunctionOperator - Class in org.hkijena.jipipe.extensions.expressions.operators
 
AdditionFunctionOperator() - Constructor for class org.hkijena.jipipe.extensions.expressions.operators.AdditionFunctionOperator
 
addLink(String, Icon, File) - Method in class org.hkijena.jipipe.ui.components.AdvancedFileChooser
 
addLinkCategory(String) - Method in class org.hkijena.jipipe.ui.components.AdvancedFileChooser
 
addMaxProgress(int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
addMergedDataAnnotation(JIPipeDataAnnotation, JIPipeDataAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Adds an annotation to the annotation list
addMergedDataAnnotation(JIPipeDataAnnotation, JIPipeDataAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Adds an annotation to the annotation list
addMergedDataAnnotations(Collection<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Adds annotations to the annotation list
addMergedDataAnnotations(Collection<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Adds annotations to the annotation list
addMergedTextAnnotation(JIPipeTextAnnotation, JIPipeTextAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Adds an annotation to the annotation list
addMergedTextAnnotation(JIPipeTextAnnotation, JIPipeTextAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Adds an annotation to the annotation list
addMergedTextAnnotations(Collection<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Adds annotations to the merged annotation storage of this interface.
addMergedTextAnnotations(Map<String, String>, JIPipeTextAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Adds annotations to the merged annotation storage of this interface.
addMergedTextAnnotations(List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Adds annotations to the merged annotation storage of this interface.
addMessage(MessagePanel.MessageType, String, JButton...) - Method in class org.hkijena.jipipe.ui.components.MessagePanel
 
AddMissingRowsInSeriesAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.rows
 
AddMissingRowsInSeriesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.rows.AddMissingRowsInSeriesAlgorithm
 
AddMissingRowsInSeriesAlgorithm(AddMissingRowsInSeriesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.rows.AddMissingRowsInSeriesAlgorithm
 
AddMissingRowsInSeriesAlgorithm.CounterVariableSource - Class in org.hkijena.jipipe.extensions.tables.nodes.rows
 
AddMissingRowsInSeriesAlgorithm.DefaultValuesVariableSource - Class in org.hkijena.jipipe.extensions.tables.nodes.rows
 
addNameToColumnIdentifiers(DefaultTableModel, String) - Static method in class org.hkijena.jipipe.utils.TableUtils
Adds a name to columns
addNewGroup() - Method in class org.hkijena.jipipe.api.grouping.parameters.GraphNodeParameterReferenceGroupCollection
Adds a new empty group
addNewInstance() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.parameters.SpotFeatureFilterParameter.List
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.parameters.SpotFeaturePenaltyParameter.List
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.parameters.TrackFeatureFilterParameter.List
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.api.collections.ListParameter
Adds a new instance of the content class Override this method for types that cannot be default-constructed
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.collections.ParameterCollectionList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.colors.ColorListParameter
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.filesystem.PathList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.list.DoubleList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.list.FloatList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.list.IntegerList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.list.LongList
 
addNewInstance() - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.list.StringList
 
AddNoise2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise
Wrapper around ImageProcessor
AddNoise2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm
Instantiates a new node type.
AddNoise2DAlgorithm(AddNoise2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddNoise2DAlgorithm
Instantiates a new node type.
addNumericColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a string column with the given name.
addOutputData(String, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(JIPipeDataSlot, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(JIPipeDataSlot, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(JIPipeDataSlot, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(JIPipeDataSlot, JIPipeVirtualData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(String, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeVirtualData) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeData, List<JIPipeTextAnnotation>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeVirtualData, List<JIPipeTextAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(String, JIPipeVirtualData, JIPipeTextAnnotationMergeMode, List<JIPipeTextAnnotation>) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(JIPipeDataSlot, JIPipeVirtualData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
 
addOutputData(JIPipeDataSlot, JIPipeData, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(JIPipeDataSlot, JIPipeVirtualData) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(String, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations should be set up till this point
addOutputData(JIPipeDataSlot, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, List<JIPipeDataAnnotation>, JIPipeDataAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(JIPipeDataSlot, JIPipeData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputData(JIPipeDataSlot, JIPipeVirtualData, List<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
Writes output data into the provided slot Please note that annotations that are added to all annotations should be set up till this point
addOutputSlot(String, String, Class<? extends JIPipeData>, String, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Adds a new input slot
addOutputSlot(String, String, Class<? extends JIPipeData>, String) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an output slot
addOutputSlot(String, String, Class<? extends JIPipeData>, String, Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an output slot
addOutputSlot(String, String, Class<? extends JIPipeData>, String, Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds an output slot
addOutputSlotForModuleItem(ModuleItem<?>, Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.extensions.imagej2.ImageJ2OpNodeInfo
 
addParameter(JIPipeMutableParameterAccess) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Adds a new parameter.
addParameter(String, Class<?>) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Adds a new parameter
addParameter(String, Class<?>, String, String, Annotation...) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
 
addParameterChangeListener(String, Consumer<JIPipeParameterCollection.ParameterChangedEvent>) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection
Adds a listener to the change of a parameter of the specified key.
addParameterChangeListener(Consumer<JIPipeParameterCollection.ParameterChangedEvent>) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterCollection
Adds a listener to the change of any parameter.
AddParameterDialog - Class in org.hkijena.jipipe.ui.components
UI that adds slots to an algorithm
AddParameterDialog(JIPipeWorkbench, JIPipeDynamicParameterCollection) - Constructor for class org.hkijena.jipipe.ui.components.AddParameterDialog
 
AddParameterDialog.Settings - Class in org.hkijena.jipipe.ui.components
 
addParameterForModuleItem(String, String, String, Class<?>, ModuleItem<?>) - Method in class org.hkijena.jipipe.extensions.imagej2.ImageJ2OpNode
 
addPoint(int, int, float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.HoughLines
Adds a single point to the hough transform.
addPoints(ImageProcessor, boolean, float) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.HoughLines
Adds points from an image.
addPopupMenuToComponent(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds a popup menu to a button.
addPopupMenuToComponent(AbstractButton, JPopupMenu) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds an existing popup menu to a button
addPostprocessorCode(StringBuilder, List<JIPipeOutputDataSlot>) - Static method in class org.hkijena.jipipe.extensions.python.PythonUtils
 
addPreset(Class<?>, ExternalEnvironment) - Method in class org.hkijena.jipipe.api.registries.JIPipeExternalEnvironmentRegistry
Adds a new preset into the storage of the environment class
addProgress(int) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
addRecentJsonExtension(Path) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
Adds a JSON extension file to the list of recent JSON extensions
addRecentProject(Path) - Method in class org.hkijena.jipipe.extensions.settings.ProjectsSettings
Adds a project file to the list of recent projects
addReloadablePopupMenuToComponent(AbstractButton, JPopupMenu, Runnable) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds an existing popup menu to a button Adds a function that is run before the popup is shown
addReloadableRightClickPopupMenuToComponent(AbstractButton, JPopupMenu, Runnable) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds an existing popup menu to a button Adds a function that is run before the popup is shown
addRightClickPopupMenuToComponent(AbstractButton) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds an existing popup menu to a button Adds a function that is run before the popup is shown
addRightClickPopupMenuToComponent(AbstractButton, JPopupMenu) - Static method in class org.hkijena.jipipe.utils.UIUtils
Adds an existing popup menu to a button Adds a function that is run before the popup is shown
AddRoiListsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.merge
Wrapper around RoiManager
AddRoiListsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.merge.AddRoiListsAlgorithm
Instantiates a new node type.
AddRoiListsAlgorithm(AddRoiListsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.merge.AddRoiListsAlgorithm
Instantiates a new node type.
AddROIToActiveJIPipeImageViewerDataDisplay - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
 
AddROIToActiveJIPipeImageViewerDataDisplay() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToActiveJIPipeImageViewerDataDisplay
 
AddROIToJIPipeImageViewerDataDisplay - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
 
AddROIToJIPipeImageViewerDataDisplay() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddROIToJIPipeImageViewerDataDisplay
 
addRow() - Method in class org.hkijena.jipipe.extensions.parameters.api.matrix.Matrix2D
Adds a new row
addRow(List<Object>) - Method in class org.hkijena.jipipe.extensions.parameters.library.table.ParameterTable
Adds a row with raw values.
addRow() - Method in class org.hkijena.jipipe.extensions.parameters.library.table.ParameterTable
Creates a new empty row
addRow(Map<String, Object>) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a new row and writes the provided values into the table
addRow() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a new row
addRowBuilder() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Deprecated.
Use addAndModifyRow() instead
addRows(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds multiple rows
addRows(ResultsTableData) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Merges another results table into this one
AddSaltAndPepperNoise2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise
Wrapper around ImageProcessor
AddSaltAndPepperNoise2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddSaltAndPepperNoise2DAlgorithm
Instantiates a new node type.
AddSaltAndPepperNoise2DAlgorithm(AddSaltAndPepperNoise2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.noise.AddSaltAndPepperNoise2DAlgorithm
Instantiates a new node type.
addSelectionContextPanel(SpotsManagerPlugin.SelectionContextPanel) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.spots.SpotsManagerPlugin
 
addSelectionContextPanel(TracksManagerPlugin.SelectionContextPanel) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.tracks.TracksManagerPlugin
 
addSelectionContextPanel(ROIManagerPluginSelectionContextPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.roimanager.ROIManagerPlugin
 
addSeries(PlotDataSeries) - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Adds a new series into this plot
addSeries() - Method in class org.hkijena.jipipe.ui.plotbuilder.PlotEditor
Adds a new series
addSlide(Component, String) - Method in class org.hkijena.jipipe.utils.ui.DotSlideshow
 
addSlot(String, JIPipeDataSlotInfo, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Adds a slots
addSlot(JIPipeInputSlot, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Adds an input slot from an annotation
addSlot(JIPipeOutputSlot, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Adds an input slot from an annotation
addSlot(JIPipeDataSlotInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Adds a slot
addSlot(String, JIPipeDataSlotInfo, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
addSlot(JIPipeDataSlotInfo, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
addSlot(String, JIPipeDataSlotInfo, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeIOSlotConfiguration
 
addStop(float, Color) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.LUTData
 
addStringColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds a string column with the given name.
addTab(String, Icon, Component, DocumentTabPane.CloseMode, boolean) - Method in class org.hkijena.jipipe.ui.components.tabs.DocumentTabPane
Adds a new tab
addTab(String, Icon, Component, DocumentTabPane.CloseMode) - Method in class org.hkijena.jipipe.ui.components.tabs.DocumentTabPane
Adds a new tab
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTableMetadata
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.api.data.JIPipeMergedExportedDataTable
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.api.matrix.Matrix2D
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.parameters.library.table.ParameterTable
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantTableModel
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.datatable.JIPipeExtendedDataTableModel
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.datatable.JIPipeExtendedMultiDataTableModel
 
addTableModelListener(TableModelListener) - Method in class org.hkijena.jipipe.ui.datatable.JIPipeSimpleDataBatchTableModel
 
addTask(String) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon
Adds a new task.
addTask(String, String) - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon
Adds a new task.
AddTemplateContextMenuAction - Class in org.hkijena.jipipe.extensions.nodetemplate
 
AddTemplateContextMenuAction() - Constructor for class org.hkijena.jipipe.extensions.nodetemplate.AddTemplateContextMenuAction
 
addText(String) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
addText(String, SimpleAttributeSet) - Method in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
addTextAnnotationToAllData(JIPipeTextAnnotation, boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Adds an annotation to all existing data
addTo(JIPipeProject, String) - Method in class org.hkijena.jipipe.api.compartments.JIPipeExportedCompartment
Adds the compartment to a project as the specified compartment name
addToForm(T, Component) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a component to the form
addToForm(T, Component, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a component to the form
addToggleButton(JToggleButton, ImageViewerPanelCanvas) - Method in interface org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanelCanvasTool
Adds events to JToggleButton that acts as control for the tool
addToken(char[], int, int, int, int, boolean) - Method in class org.hkijena.jipipe.extensions.r.ui.RTokenMaker
Adds the token specified to the current linked list of tokens.
addToMajor(int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.general.connections.NonCollidingRectangularLineDrawer
 
addToMajor(int) - Method in class org.hkijena.jipipe.ui.grapheditor.general.connections.RectangularLineDrawer
 
addToMinor(int, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.general.connections.NonCollidingRectangularLineDrawer
 
addToMinor(int) - Method in class org.hkijena.jipipe.ui.grapheditor.general.connections.RectangularLineDrawer
 
addToOpenPanels() - Method in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel
 
addToRoiManager(RoiManager) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Adds the ROI to an existing ROI manager instance
AddToROIManagerDataDisplay - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
 
AddToROIManagerDataDisplay() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.AddToROIManagerDataDisplay
 
addToSelection(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
Adds an algorithm to the selection
addToSelection(JIPipeNodeUI) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphEditorUI
Adds an algorithm to the selection
addToTable(ResultsTable) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds the table to an existing table
addUpdateSite(UpdateSite) - Method in class org.hkijena.jipipe.ui.ijupdater.JIPipeImageJPluginManager
 
addUser(Object) - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData
Marks the provided object as user of this data
addVerticalGlue() - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a component that acts as Box.verticalGlue()
addVerticalGlue(Component, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a vertical glue component
addWideToForm(T) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a component.
addWideToForm(T, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel
Adds a component.
adjustmentValueChanged(AdjustmentEvent) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphEditorMinimap
 
AdvancedFileChooser - Class in org.hkijena.jipipe.ui.components
 
AdvancedFileChooser() - Constructor for class org.hkijena.jipipe.ui.components.AdvancedFileChooser
 
AdvancedFileChooser(File) - Constructor for class org.hkijena.jipipe.ui.components.AdvancedFileChooser
 
AdvancedFileChooser.FileChooserComponent - Class in org.hkijena.jipipe.ui.components
 
AdvancedFileChooser.FileChooserComponentUI - Class in org.hkijena.jipipe.ui.components
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.algorithms.CachedTrackmateAlgorithmViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.spots.CachedSpotCollectionDataViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.tracks.CachedTracksCollectionDataViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.trackscheme.TrackSchemeCachedDataViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.CachedImagePlusDataViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.CachedROIListDataViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.CachedParametersDataViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.plots.CachedPlotViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.strings.CachedTextViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.extensions.tables.display.CachedTableViewerWindow
 
afterSetRow() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataViewerWindow
Called after the data row was changed
AlgorithmDeselectedEvent(JIPipeNodeInfoPicker, JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.ui.components.pickers.JIPipeNodeInfoPicker.AlgorithmDeselectedEvent
 
AlgorithmEvent(JIPipeNodeUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeNodeUI.AlgorithmEvent
Creates a new event
AlgorithmFinderSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.GraphEditorUISettings.AlgorithmFinderSettings
 
AlgorithmFinderSuccessEvent - Class in org.hkijena.jipipe.ui.algorithmfinder
Generated when the algorithm finder successfully found a connection
AlgorithmFinderSuccessEvent(JIPipeDataSlot, JIPipeDataSlot) - Constructor for class org.hkijena.jipipe.ui.algorithmfinder.AlgorithmFinderSuccessEvent
 
AlgorithmGraphCopyNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard
 
AlgorithmGraphCopyNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard.AlgorithmGraphCopyNodeUIContextAction
 
AlgorithmGraphCutNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard
 
AlgorithmGraphCutNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard.AlgorithmGraphCutNodeUIContextAction
 
AlgorithmGraphDuplicateNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard
 
AlgorithmGraphDuplicateNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard.AlgorithmGraphDuplicateNodeUIContextAction
 
AlgorithmGraphPasteNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard
 
AlgorithmGraphPasteNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.compartments.contextmenu.clipboard.clipboard.AlgorithmGraphPasteNodeUIContextAction
 
AlgorithmSelectedEvent(JIPipeNodeUI, boolean) - Constructor for class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI.AlgorithmSelectedEvent
 
AlgorithmSelectionChangedEvent(JIPipeGraphCanvasUI) - Constructor for class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI.AlgorithmSelectionChangedEvent
 
ALL_DESCRIPTIONS - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.ImageStatisticsSetParameter
 
AllCacheToNonVirtualRun - Class in org.hkijena.jipipe.ui.data
 
AllCacheToNonVirtualRun() - Constructor for class org.hkijena.jipipe.ui.data.AllCacheToNonVirtualRun
 
AllCacheToVirtualRun - Class in org.hkijena.jipipe.ui.data
 
AllCacheToVirtualRun() - Constructor for class org.hkijena.jipipe.ui.data.AllCacheToVirtualRun
 
AllMeasurementExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util.measure
A variable source that contains the ImageJ measurements.
AllMeasurementExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.measure.AllMeasurementExpressionParameterVariableSource
 
ALLOWED_PARAMETER_CLASSES - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.MacroWrapperAlgorithm
 
ALLOWED_PARAMETER_CLASSES - Static variable in class org.hkijena.jipipe.extensions.python.PythonUtils
 
ALLOWED_PARAMETER_CLASSES - Static variable in class org.hkijena.jipipe.extensions.r.RUtils
 
ALLOWED_PARAMETER_TYPES - Static variable in class org.hkijena.jipipe.extensions.clij2.CLIJExtension
 
ALLOWED_VALUES - Static variable in class org.hkijena.jipipe.extensions.ijtrackmate.parameters.EdgeFeature
 
ALLOWED_VALUES - Static variable in class org.hkijena.jipipe.extensions.ijtrackmate.parameters.SpotFeature
 
ALLOWED_VALUES - Static variable in class org.hkijena.jipipe.extensions.ijtrackmate.parameters.TrackFeature
 
allowOutputSlotInheritance(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
Enables/disables if slot inheritance is allowed
allowsInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
allowsInputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
allowsOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
allowsOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
AlwaysOnTopToggle - Class in org.hkijena.jipipe.ui.components.window
 
AlwaysOnTopToggle(JWindow) - Constructor for class org.hkijena.jipipe.ui.components.window.AlwaysOnTopToggle
 
AlwaysOnTopToggle(JFrame) - Constructor for class org.hkijena.jipipe.ui.components.window.AlwaysOnTopToggle
 
AlwaysOnTopToggle(JDialog) - Constructor for class org.hkijena.jipipe.ui.components.window.AlwaysOnTopToggle
 
AnalyzeSkeleton2D3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze
 
AnalyzeSkeleton2D3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.AnalyzeSkeleton2D3DAlgorithm
 
AnalyzeSkeleton2D3DAlgorithm(AnalyzeSkeleton2D3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.AnalyzeSkeleton2D3DAlgorithm
 
AnalyzeSkeleton2D3DAlgorithm.CycleRemovalMethod - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze
 
AnalyzeSkeleton2D3DAlgorithm.EndRemovalMethod - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze
 
AnalyzeSkeleton2D3DAlgorithm.OutputParameters - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze
 
Anchor - Enum in org.hkijena.jipipe.extensions.parameters.library.roi
An anchor
AnchorParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.library.roi
Editor for Margin
AnchorParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.library.roi.AnchorParameterEditorUI
 
AnchorParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.library.roi
Allows to modify the behavior of the Anchor parameter editor UI
AnimatedIcon - Class in org.hkijena.jipipe.ui.components.icons
 
AnimatedIcon(Component, ImageIcon, ImageIcon, int, double) - Constructor for class org.hkijena.jipipe.ui.components.icons.AnimatedIcon
 
ANIMATION_DELAY - Static variable in class org.hkijena.jipipe.ui.components.icons.NewThrobberIcon
 
AnimationSpeedPlugin - Class in org.hkijena.jipipe.extensions.imageviewer.plugins
 
AnimationSpeedPlugin(ImageViewerPanel) - Constructor for class org.hkijena.jipipe.extensions.imageviewer.plugins.AnimationSpeedPlugin
 
AnnotateByExpression - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Algorithm that annotates all data with the same annotation
AnnotateByExpression(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression
 
AnnotateByExpression(AnnotateByExpression) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateByExpression
Copies the algorithm
AnnotateByExpression.VariableSource - Class in org.hkijena.jipipe.extensions.annotation.algorithms
 
AnnotateByImageStatisticsExpressionAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze
Wrapper around RoiManager
AnnotateByImageStatisticsExpressionAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.AnnotateByImageStatisticsExpressionAlgorithm
Instantiates a new node type.
AnnotateByImageStatisticsExpressionAlgorithm(AnnotateByImageStatisticsExpressionAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.AnnotateByImageStatisticsExpressionAlgorithm
Instantiates a new node type.
AnnotateByTablePropertiesAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.annotations
 
AnnotateByTablePropertiesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.AnnotateByTablePropertiesAlgorithm
 
AnnotateByTablePropertiesAlgorithm(AnnotateByTablePropertiesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.AnnotateByTablePropertiesAlgorithm
 
AnnotateDataWithTableValues - Class in org.hkijena.jipipe.extensions.tables.nodes.annotations
 
AnnotateDataWithTableValues(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.AnnotateDataWithTableValues
 
AnnotateDataWithTableValues(AnnotateDataWithTableValues) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.AnnotateDataWithTableValues
 
AnnotateDataWithTableValues.AnnotationSettings - Class in org.hkijena.jipipe.extensions.tables.nodes.annotations
 
AnnotateWithAnnotationTable - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Algorithm that merges the annotations of all inputs and outputs the data with the shared annotations
AnnotateWithAnnotationTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable
Creates a new instance
AnnotateWithAnnotationTable(AnnotateWithAnnotationTable) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable
Creates a copy
AnnotateWithData - Class in org.hkijena.jipipe.extensions.annotation.algorithms
 
AnnotateWithData(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithData
 
AnnotateWithData(AnnotateWithData) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithData
 
AnnotateWithDataString - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Generates annotations from filenames
AnnotateWithDataString(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString
New instance
AnnotateWithDataString(AnnotateWithDataString) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithDataString
Copies the algorithm
AnnotateWithDataTableProperties - Class in org.hkijena.jipipe.extensions.utils.algorithms.datatable
 
AnnotateWithDataTableProperties(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.datatable.AnnotateWithDataTableProperties
 
AnnotateWithDataTableProperties(AnnotateWithDataTableProperties) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.datatable.AnnotateWithDataTableProperties
 
AnnotateWithOverlapMeasureLabelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels
 
AnnotateWithOverlapMeasureLabelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.AnnotateWithOverlapMeasureLabelsAlgorithm
 
AnnotateWithOverlapMeasureLabelsAlgorithm(AnnotateWithOverlapMeasureLabelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.AnnotateWithOverlapMeasureLabelsAlgorithm
 
AnnotateWithPathProperties - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
 
AnnotateWithPathProperties(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotateWithPathProperties
 
AnnotateWithPathProperties(AnnotateWithPathProperties) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotateWithPathProperties
 
AnnotateWithSourceSlot - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Generates annotations from filenames
AnnotateWithSourceSlot(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithSourceSlot
New instance
AnnotateWithSourceSlot(AnnotateWithSourceSlot) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithSourceSlot
Copies the algorithm
AnnotationFilterExpression - Class in org.hkijena.jipipe.extensions.annotation.algorithms
 
AnnotationFilterExpression() - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotationFilterExpression
 
AnnotationFilterExpression(String) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotationFilterExpression
 
AnnotationFilterExpression(AbstractExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotationFilterExpression
 
AnnotationGeneratorExpression - Class in org.hkijena.jipipe.extensions.expressions
An expression that is used to generate annotations for data
AnnotationGeneratorExpression() - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationGeneratorExpression
 
AnnotationGeneratorExpression(String) - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationGeneratorExpression
 
AnnotationGeneratorExpression(AbstractExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationGeneratorExpression
 
AnnotationGeneratorExpressionVariableSource - Class in org.hkijena.jipipe.extensions.expressions
 
AnnotationGeneratorExpressionVariableSource() - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationGeneratorExpressionVariableSource
 
AnnotationInfoPlugin - Class in org.hkijena.jipipe.extensions.imageviewer.plugins
To be used with CachedImagePlusDataViewerWindow and other similar implementations that have access to the cache
AnnotationInfoPlugin(ImageViewerPanel, JIPipeCacheDataViewerWindow) - Constructor for class org.hkijena.jipipe.extensions.imageviewer.plugins.AnnotationInfoPlugin
 
annotationListToMap(Collection<JIPipeTextAnnotation>, JIPipeTextAnnotationMergeMode) - Static method in class org.hkijena.jipipe.api.annotation.JIPipeTextAnnotation
Converts a set of annotations to a map
annotationListToPython(Collection<JIPipeTextAnnotation>) - Static method in class org.hkijena.jipipe.api.annotation.JIPipeTextAnnotation
Converts a list of annotations into a Python dictionary
annotationMapToPython(Map<String, JIPipeTextAnnotation>) - Static method in class org.hkijena.jipipe.api.annotation.JIPipeTextAnnotation
Converts a map of annotations into a Python dictionary
AnnotationQueryExpression - Class in org.hkijena.jipipe.extensions.expressions
An expression that is used to query annotations
AnnotationQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationQueryExpression
 
AnnotationQueryExpression(String) - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationQueryExpression
 
AnnotationQueryExpression(AbstractExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationQueryExpression
 
AnnotationQueryExpressionVariableSource - Class in org.hkijena.jipipe.extensions.expressions
 
AnnotationQueryExpressionVariableSource() - Constructor for class org.hkijena.jipipe.extensions.expressions.AnnotationQueryExpressionVariableSource
 
ANNOTATIONS_VARIABLE - Static variable in class org.hkijena.jipipe.extensions.expressions.ExpressionParameterVariable
 
AnnotationSettings() - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.AnnotateDataWithTableValues.AnnotationSettings
 
AnnotationsExtension - Class in org.hkijena.jipipe.extensions.annotation
Extension that provides data types and algorithms to modify data annotations
AnnotationsExtension() - Constructor for class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension
 
AnnotationsNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories
 
AnnotationsNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
AnnotationsToParametersAlgorithm - Class in org.hkijena.jipipe.extensions.multiparameters.nodes
 
AnnotationsToParametersAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.nodes.AnnotationsToParametersAlgorithm
 
AnnotationsToParametersAlgorithm(AnnotationsToParametersAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.nodes.AnnotationsToParametersAlgorithm
 
annotationsToPython(StringBuilder, Collection<JIPipeTextAnnotation>) - Static method in class org.hkijena.jipipe.extensions.python.PythonUtils
Converts annotations into Python code.
AnnotationTableData - Class in org.hkijena.jipipe.extensions.tables.datatypes
A special kind of ResultsTableData that stores annotation columns.
AnnotationTableData() - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
 
AnnotationTableData(Map<String, TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
 
AnnotationTableData(Collection<TableColumn>) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
 
AnnotationTableData(ResultsTable) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
 
AnnotationTableData(ResultsTableData) - Constructor for class org.hkijena.jipipe.extensions.tables.datatypes.AnnotationTableData
 
AnnotationTableFromFile - Class in org.hkijena.jipipe.extensions.annotation.datasources
Imports AnnotationTableData from a file
AnnotationTableFromFile(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.datasources.AnnotationTableFromFile
 
AnnotationTableFromFile(AnnotationTableFromFile) - Constructor for class org.hkijena.jipipe.extensions.annotation.datasources.AnnotationTableFromFile
Copies the algorithm
AnnotationTableToPaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Filters input files
AnnotationTableToPaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths
Instantiates the algorithm
AnnotationTableToPaths(AnnotationTableToPaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationTableToPaths
Copies the algorithm
AnnotationToPath - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Filters input files
AnnotationToPath(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath
Instantiates the algorithm
AnnotationToPath(AnnotationToPath) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.AnnotationToPath
Copies the algorithm
annotationType() - Method in class org.hkijena.jipipe.api.JIPipeDefaultDocumentation
 
annotationType() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot
 
annotationType() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot
 
AnyClassFilter - Class in org.hkijena.jipipe.utils.classfilters
 
AnyClassFilter() - Constructor for class org.hkijena.jipipe.utils.classfilters.AnyClassFilter
 
AppendRectangularRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate
Deprecated.
AppendRectangularRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate.AppendRectangularRoiAlgorithm
Deprecated.
Instantiates a new node type.
AppendRectangularRoiAlgorithm(AppendRectangularRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.generate.AppendRectangularRoiAlgorithm
Deprecated.
Instantiates a new node type.
apply(JIPipeDataTable, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.compat.ImageJDataExportOperation
 
apply(List<Object>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.compat.ImageJDataImportOperation
 
apply(double, ExpressionVariables) - Method in class org.hkijena.jipipe.extensions.expressions.NumericFunctionExpression
 
apply(Object) - Method in class org.hkijena.jipipe.extensions.expressions.ui.ExpressionBuilderUI.EntryToStringFunction
 
apply(double) - Method in enum org.hkijena.jipipe.extensions.parameters.library.colors.ColorMap
Generates a color according to the color map
apply(String) - Method in class org.hkijena.jipipe.extensions.parameters.library.patterns.StringPatternExtraction
 
apply(Collection<Boolean>) - Method in enum org.hkijena.jipipe.extensions.parameters.library.util.LogicalOperation
Apply the logical operation for the items
apply(TableColumn) - Method in interface org.hkijena.jipipe.extensions.tables.ColumnOperation
Applies the operation
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.AbsoluteColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusCosineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusSineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusTangentColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.CeilingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ClampNegativeColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ClampPositiveColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.CosineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.DegreeToRadiansColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ExpColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.FactorizeColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.FloorColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicCosineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicSineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.HyperbolicTangentColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.LnColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.Log10ColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.OccurrencesColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.RadiansToDegreeColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.RemoveNaNColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.RoundColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SignColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SineColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SortAscendingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SortDescendingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SqrtColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.SquareColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.TangentColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ToNumericColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.converting.ToStringColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.GetFirstIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.GetLastIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.MergeToJsonIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsAverageIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCountNonZeroIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsCumulativeSumColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsGeometricMeanIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsKurtosisIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMaxIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMedianIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsMinIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsSkewnessIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsStandardDeviationIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsVarianceIntegratingColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.StatisticsWeightedSumColumnOperation
 
apply(TableColumn) - Method in class org.hkijena.jipipe.extensions.tables.operations.integrating.SumIntegratingColumnOperation
 
ApplyColorMathExpression2DExpression - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
 
ApplyColorMathExpression2DExpression(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyColorMathExpression2DExpression
 
ApplyColorMathExpression2DExpression(ApplyColorMathExpression2DExpression) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyColorMathExpression2DExpression
 
ApplyDistanceTransform2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap
Wrapper around EDM
ApplyDistanceTransform2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap.ApplyDistanceTransform2DAlgorithm
Instantiates a new node type.
ApplyDistanceTransform2DAlgorithm(ApplyDistanceTransform2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap.ApplyDistanceTransform2DAlgorithm
Instantiates a new node type.
ApplyExpressionPerRowAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.rows
 
ApplyExpressionPerRowAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.rows.ApplyExpressionPerRowAlgorithm
 
ApplyExpressionPerRowAlgorithm(ApplyExpressionPerRowAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.rows.ApplyExpressionPerRowAlgorithm
 
ApplyExpressionPerRowAlgorithm.VariableSource - Class in org.hkijena.jipipe.extensions.tables.nodes.rows
 
ApplyExpressionToColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.columns
Algorithm that integrates columns
ApplyExpressionToColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ApplyExpressionToColumnsAlgorithm
Creates a new instance
ApplyExpressionToColumnsAlgorithm(ApplyExpressionToColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ApplyExpressionToColumnsAlgorithm
Creates a copy
applyInheritanceConversion(JIPipeDataSlotInfo, Class<? extends JIPipeData>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
Applies inheritance conversion.
applyLUT(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.LUTInverterAlgorithm
 
applyLUT() - Method in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerLUTEditor
 
ApplyLUTAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut
 
ApplyLUTAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.ApplyLUTAlgorithm
 
ApplyLUTAlgorithm(ApplyLUTAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.ApplyLUTAlgorithm
 
ApplyMath2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around ImageProcessor
ApplyMath2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm
Instantiates a new node type.
ApplyMath2DAlgorithm(ApplyMath2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMath2DAlgorithm
Instantiates a new node type.
ApplyMath2DAlgorithm.Transformation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Available transformation functions
ApplyMathExpression2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around ImageProcessor
ApplyMathExpression2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMathExpression2DAlgorithm
Instantiates a new node type.
ApplyMathExpression2DAlgorithm(ApplyMathExpression2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyMathExpression2DAlgorithm
Instantiates a new node type.
applyOperation(List<ResultsTableData.Index>, ConvertingColumnOperation) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Applies an operation to the selected cells
ApplyRun - Class in org.hkijena.jipipe.ui.ijupdater
 
ApplyRun(FilesCollection) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ApplyRun
 
applyTemplateToItems() - Method in class org.hkijena.jipipe.extensions.parameters.library.collections.ParameterCollectionList
Applies the entries of the current template to all items (adding/removing/changing items)
applyThemeToCodeEditor(RSyntaxTextArea) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
applyTo(Roi, ExpressionVariables) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.draw.ROIProperties
 
applyToRoi(Roi) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ROIEditor
 
applyToRoiReference(Roi, ExpressionVariables) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.draw.ROIProperties
Note that this is without cloning the ROI
ApplyTransform2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around ImageProcessor
ApplyTransform2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm
Instantiates a new node type.
ApplyTransform2DAlgorithm(ApplyTransform2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyTransform2DAlgorithm
Instantiates a new node type.
ApplyTransform2DAlgorithm.Transformation - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Available transformation functions
ApplyVectorMathExpression2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math
Wrapper around ImageProcessor
ApplyVectorMathExpression2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyVectorMathExpression2DAlgorithm
Instantiates a new node type.
ApplyVectorMathExpression2DAlgorithm(ApplyVectorMathExpression2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.ApplyVectorMathExpression2DAlgorithm
Instantiates a new node type.
applyVirtualState(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
If virtual, put all data into the virtual storage If not, fetch all virtual data from storage This function reacts to the virtual mode setting in VirtualDataSettings and will refuse to make data virtual
ArchiveUtils - Class in org.hkijena.jipipe.utils
 
ArchiveUtils() - Constructor for class org.hkijena.jipipe.utils.ArchiveUtils
 
ArcusCosineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
ArcusCosineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusCosineColumnOperation
 
ArcusSineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
ArcusSineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusSineColumnOperation
 
ArcusTangentColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
ArcusTangentColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ArcusTangentColumnOperation
 
ArrangeChannelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
Wrapper around ChannelArranger
ArrangeChannelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm
Instantiates a new node type.
ArrangeChannelsAlgorithm(ArrangeChannelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ArrangeChannelsAlgorithm
Creates a copy
ArrayUtils - Class in org.hkijena.jipipe.utils
 
ArrayUtils() - Constructor for class org.hkijena.jipipe.utils.ArrayUtils
 
ArrowLessScrollBarUI - Class in org.hkijena.jipipe.ui.theme
 
ArrowLessScrollBarUI() - Constructor for class org.hkijena.jipipe.ui.theme.ArrowLessScrollBarUI
 
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.annotation.AnnotationsExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.cellpose.CellposeExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.clij2.CLIJExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.core.CoreExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.filesystem.FilesystemExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.forms.FormsExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.ijmultitemplatematching.MultiTemplateMatchingExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.ijtrackmate.TrackMateExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.ijweka.WekaExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.imagej2.ImageJ2Extension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ImageJAlgorithmsExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.imagejdatatypes.ImageJDataTypesExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.multiparameters.MultiParameterAlgorithmsExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.omero.OMEROExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.omnipose.OmniposeExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.plots.PlotsExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.python.PythonExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.r.RExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.strings.StringsExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.tables.TablesExtension
Dependency instance to be used for creating the set of dependencies
AS_DEPENDENCY - Static variable in class org.hkijena.jipipe.extensions.utils.UtilitiesExtension
Dependency instance to be used for creating the set of dependencies
askOpenInCurrentWindow(Component, String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Asks the user how to open a project: In the current window or a new window
AssembleExtractedROIAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble
 
AssembleExtractedROIAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble.AssembleExtractedROIAlgorithm
 
AssembleExtractedROIAlgorithm(AssembleExtractedROIAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.assemble.AssembleExtractedROIAlgorithm
 
assert2DImage(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
assert3DImage(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
assert4DImage(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
assert5DImage(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
AsserterWrapperImageSource - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util
 
AsserterWrapperImageSource(ImageSource, Consumer<ImagePlus>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.AsserterWrapperImageSource
 
assertImageDimensions(ImagePlus, int) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
assignButtonMenu - Variable in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeDataSlotUI
 
assignData(String, TableColumn) - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
Assigns data to a column
assignDataStoragePaths() - Method in class org.hkijena.jipipe.api.JIPipeProjectRun
Iterates through output slots and assigns the data storage paths
attach(Class<?>, Object) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Attaches an object as the specified type Warning: Attachments are not serialized
attach(Object) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Attaches the object with its class as key.
attachAdditionalMetadata(String, Object) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Attaches additional metadata (persistent)
AUTO_THRESHOLDER - Static variable in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdFunction
 
autoClean(boolean, boolean, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Safely removes cache entries that are not accessible anymore (e.g. an algorithm was removed from the graph; or states where the slots do not exist anymore)
autoCreate() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeInputSlot
 
autoCreate() - Method in class org.hkijena.jipipe.api.nodes.DefaultJIPipeOutputSlot
 
autoCreateSlots() - Method in class org.hkijena.jipipe.api.grouping.NodeGroup
Automatically creates slots that connect all inputs
autoExpandLeftTop() - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
 
autoLayout() - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
Applies a full auto-layout method
autoLayoutAll() - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
Auto-layouts all UIs
autoPlaceCloseToCursor(JIPipeNodeUI, boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
 
autoPlaceCloseToLocation(JIPipeNodeUI, Point) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
Moves the node close to a real location
AutoResizeSplitPane - Class in org.hkijena.jipipe.utils
A split pane that automatically resizes itself to a ratio
AutoResizeSplitPane(int, double) - Constructor for class org.hkijena.jipipe.utils.AutoResizeSplitPane
 
AutoResizeSplitPane(int, Component, Component, double) - Constructor for class org.hkijena.jipipe.utils.AutoResizeSplitPane
 
autoSave(JIPipeProjectWindow) - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
autoSaveAll() - Method in class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
AutoSaveSettings - Class in org.hkijena.jipipe.extensions.settings
 
AutoSaveSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.AutoSaveSettings
 
autoSizeColumns() - Method in class org.hkijena.jipipe.ui.tableeditor.TableEditor
Auto-sizes all columns
AutoThreshold2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Thresholding node that thresholds via an auto threshold
AutoThreshold2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm
 
AutoThreshold2DAlgorithm(AutoThreshold2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.AutoThreshold2DAlgorithm
Copies the algorithm
AutoThreshold2DAlgorithm.SliceThresholdMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
 
AVAILABLE_FONTS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.primitives.FontFamilyParameter
 
AverageKeyValueThresholdStatisticsGenerator - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics
 
AverageKeyValueThresholdStatisticsGenerator(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.AverageKeyValueThresholdStatisticsGenerator
 
AverageKeyValueThresholdStatisticsGenerator(AverageKeyValueThresholdStatisticsGenerator) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.statistics.AverageKeyValueThresholdStatisticsGenerator
 
AVICompression - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util
Wrapper around AVI_Writer compression

B

b0 - Variable in class org.hkijena.jipipe.ui.grapheditor.general.connections.RectangularLine
 
b1 - Variable in class org.hkijena.jipipe.ui.grapheditor.general.connections.RectangularLine
 
BackgroundPanel - Class in org.hkijena.jipipe.ui.components
 
BackgroundPanel(BufferedImage, boolean) - Constructor for class org.hkijena.jipipe.ui.components.BackgroundPanel
 
Band(String, Ribbon.Action...) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Band
 
Band(String, List<Ribbon.Action>) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Band
 
Band(String, String, Ribbon.Action...) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Band
 
Band(String, String, List<Ribbon.Action>) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.Ribbon.Band
 
BarBoxAndWhiskerCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
A box and whisker plot Series table columns: Value (Double), Category (String), Group (String) Multiple series: Yes
BarBoxAndWhiskerCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData
Creates a new instance
BarBoxAndWhiskerCategoryPlotData(BarBoxAndWhiskerCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarBoxAndWhiskerCategoryPlotData
Creates a copy
BarCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
A bar category plot Series table columns: Value (Double), Category (String), Group (String) Multiple series: No
BarCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData
Creates a new instance
BarCategoryPlotData(BarCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarCategoryPlotData
Creates a copy
BarStatisticalCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
A statistical bar category plot Series table columns: Value (Double), Category (String), Group (String) Multiple series: No
BarStatisticalCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData
Creates a new instance
BarStatisticalCategoryPlotData(BarStatisticalCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BarStatisticalCategoryPlotData
Creates a copy
base64ToImage(String) - Static method in class org.hkijena.jipipe.utils.BufferedImageUtils
 
base64ToObject(String) - Static method in class org.hkijena.jipipe.utils.SerializationUtils
Deserializes a Java object from its binary representation (as base64 string)
BaseDirectoryChangedEvent(Path) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeGraphNode.BaseDirectoryChangedEvent
 
BasicMinicondaEnvPythonInstaller - Class in org.hkijena.jipipe.extensions.python.installers
 
BasicMinicondaEnvPythonInstaller(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.python.installers.BasicMinicondaEnvPythonInstaller
 
BasicMinicondaEnvPythonInstaller.Configuration - Class in org.hkijena.jipipe.extensions.python.installers
 
BasicPortableEnvPythonInstaller - Class in org.hkijena.jipipe.extensions.python.installers
 
BasicPortableEnvPythonInstaller(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.python.installers.BasicPortableEnvPythonInstaller
 
BasicPortableEnvPythonInstaller.Configuration - Class in org.hkijena.jipipe.extensions.python.installers
 
BatchAssistantExtension - Class in org.hkijena.jipipe.extensions.batchassistant
 
BatchAssistantExtension() - Constructor for class org.hkijena.jipipe.extensions.batchassistant.BatchAssistantExtension
 
beforeDraw(int, int, int) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.CalibrationPlugin
 
beforeDraw(int, int, int) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.ImageViewerPanelPlugin
Called before draw is called
beforeDraw(int, int, int) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.LUTManagerPlugin
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.algorithms.CachedTrackmateAlgorithmViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.spots.CachedSpotCollectionDataViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.tracks.CachedTracksCollectionDataViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.trackscheme.TrackSchemeCachedDataViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.CachedImagePlusDataViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.display.CachedROIListDataViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.multiparameters.datatypes.CachedParametersDataViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.plots.CachedPlotViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.strings.CachedTextViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.extensions.tables.display.CachedTableViewerWindow
 
beforeSetRow() - Method in class org.hkijena.jipipe.ui.cache.JIPipeCacheDataViewerWindow
Called before the data row is changed
beginModificationBlock() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Halts all ParameterStructureChangedEvent until endModificationBlock() is called.
Bernsen(ImageProcessor, int, double, boolean) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local.BernsenLocalAutoThreshold2DAlgorithm
 
BernsenLocalAutoThreshold2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local
Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold
BernsenLocalAutoThreshold2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local.BernsenLocalAutoThreshold2DAlgorithm
 
BernsenLocalAutoThreshold2DAlgorithm(BernsenLocalAutoThreshold2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local.BernsenLocalAutoThreshold2DAlgorithm
Copies the algorithm
BinarizeAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
 
BinarizeAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.BinarizeAlgorithm
Instantiates a new node type.
BinarizeAlgorithm(BinarizeAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.BinarizeAlgorithm
Instantiates a new node type.
binaryFileToObject(Path) - Static method in class org.hkijena.jipipe.utils.SerializationUtils
Deserializes a Java object from a binary file via ObjectInputStream
BioFormatsConfigTool - Class in org.hkijena.jipipe.extensions.imagejdatatypes.tools
 
BioFormatsConfigTool(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.tools.BioFormatsConfigTool
Creates a new instance
BioFormatsExporter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms
 
BioFormatsExporter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter
 
BioFormatsExporter(BioFormatsExporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.BioFormatsExporter
 
BioFormatsImporter - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources
BioFormats importer wrapper
BioFormatsImporter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources.BioFormatsImporter
 
BioFormatsImporter(BioFormatsImporter) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.datasources.BioFormatsImporter
Copies the algorithm
BitDepth - Enum in org.hkijena.jipipe.extensions.imagejdatatypes.util
Enum of ImageJ bit depths
BitDepthEnumItemInfo - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util
 
BitDepthEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.BitDepthEnumItemInfo
 
bitDepthToImagePlusDataType(int) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Returns the general ImagePlusData class for a bit depth
BitwiseLogicalOperationAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
 
BitwiseLogicalOperationAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.BitwiseLogicalOperationAlgorithm
 
BitwiseLogicalOperationAlgorithm(BitwiseLogicalOperationAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.BitwiseLogicalOperationAlgorithm
 
BLACK_TRANSPARENT - Static variable in class org.hkijena.jipipe.utils.ColorUtils
 
BlackToWhiteTrackBackground - Class in org.hkijena.jipipe.extensions.imagejalgorithms.utils
 
BlackToWhiteTrackBackground() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.utils.BlackToWhiteTrackBackground
 
blend(int, int, double) - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.BlendImagesAlgorithm.BlendMode
 
BlendImagesAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
 
BlendImagesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.BlendImagesAlgorithm
 
BlendImagesAlgorithm(BlendImagesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.BlendImagesAlgorithm
 
BlendImagesAlgorithm.BlendMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
 
BlendImagesAlgorithm.Layer - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
 
bold - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
BOOKMARK_SHADOW_BORDER - Static variable in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
 
BookmarkedNodeListCellRenderer - Class in org.hkijena.jipipe.ui.bookmarks
Renderer for JIPipeGraphNode
BookmarkedNodeListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.bookmarks.BookmarkedNodeListCellRenderer
Creates a new renderer
BookmarkListPanel - Class in org.hkijena.jipipe.ui.bookmarks
 
BookmarkListPanel(JIPipeWorkbench, JIPipeGraph, JIPipeGraphEditorUI) - Constructor for class org.hkijena.jipipe.ui.bookmarks.BookmarkListPanel
 
BooleanComboBoxItemRenderer(String, String) - Constructor for class org.hkijena.jipipe.extensions.parameters.library.primitives.BooleanParameterEditorUI.BooleanComboBoxItemRenderer
 
BooleanFalseConstant - Class in org.hkijena.jipipe.extensions.expressions.constants
 
BooleanFalseConstant() - Constructor for class org.hkijena.jipipe.extensions.expressions.constants.BooleanFalseConstant
 
BooleanFormData - Class in org.hkijena.jipipe.extensions.forms.datatypes
 
BooleanFormData() - Constructor for class org.hkijena.jipipe.extensions.forms.datatypes.BooleanFormData
 
BooleanFormData(BooleanFormData) - Constructor for class org.hkijena.jipipe.extensions.forms.datatypes.BooleanFormData
 
BooleanFormGeneratorAlgorithm - Class in org.hkijena.jipipe.extensions.forms.algorithms
 
BooleanFormGeneratorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.forms.algorithms.BooleanFormGeneratorAlgorithm
 
BooleanFormGeneratorAlgorithm(BooleanFormGeneratorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.forms.algorithms.BooleanFormGeneratorAlgorithm
 
BooleanParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.library.primitives
Parameter editor for boolean data
BooleanParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.library.primitives.BooleanParameterEditorUI
 
BooleanParameterEditorUI.BooleanComboBoxItemRenderer - Class in org.hkijena.jipipe.extensions.parameters.library.primitives
 
BooleanParameterImageJ2ModuleInput - Class in org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives
 
BooleanParameterImageJ2ModuleInput() - Constructor for class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.BooleanParameterImageJ2ModuleInput
 
BooleanParameterImageJ2ModuleOutput - Class in org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives
 
BooleanParameterImageJ2ModuleOutput() - Constructor for class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.BooleanParameterImageJ2ModuleOutput
 
BooleanParameterSettings - Annotation Type in org.hkijena.jipipe.extensions.parameters.library.primitives
 
BooleanParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.library.primitives
Info for Boolean
BooleanParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.primitives.BooleanParameterTypeInfo
 
BooleanPrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.library.primitives
Info for Boolean
BooleanPrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.primitives.BooleanPrimitiveParameterTypeInfo
 
BooleanTrueConstant - Class in org.hkijena.jipipe.extensions.expressions.constants
 
BooleanTrueConstant() - Constructor for class org.hkijena.jipipe.extensions.expressions.constants.BooleanTrueConstant
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.ExportNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImageJNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
BORDER_COLOR - Static variable in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.AnnotationsNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.ExportNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.FileSystemNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImageJNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.ImagesNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.MiscellaneousNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.RoiNodeTypeCategory
 
BORDER_COLOR_DARK - Static variable in class org.hkijena.jipipe.api.nodes.categories.TableNodeTypeCategory
 
BorderImageJ2OutOfBoundsFactoryData - Class in org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds
 
BorderImageJ2OutOfBoundsFactoryData() - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.BorderImageJ2OutOfBoundsFactoryData
 
BorderImageJ2OutOfBoundsFactoryData(OutOfBoundsPeriodicFactory<?, ?>) - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.BorderImageJ2OutOfBoundsFactoryData
 
BorderImageJ2OutOfBoundsFactoryData(BorderImageJ2OutOfBoundsFactoryData) - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.BorderImageJ2OutOfBoundsFactoryData
 
BorderMode - Enum in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
 
BoxAndWhiskerCategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Contains data for box and whisker category plots category plots.
BoxAndWhiskerCategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BoxAndWhiskerCategoryPlotData
Creates a new instance
BoxAndWhiskerCategoryPlotData(BoxAndWhiskerCategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.BoxAndWhiskerCategoryPlotData
Creates a copy
BoxFilter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
Wrapper around ImageProcessor
BoxFilter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm
Instantiates a new node type.
BoxFilter2DAlgorithm(BoxFilter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter2DAlgorithm
Instantiates a new node type.
BoxFilter3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur
Wrapper around GaussianBlur
BoxFilter3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm
Instantiates a new node type.
BoxFilter3DAlgorithm(BoxFilter3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.blur.BoxFilter3DAlgorithm
Instantiates a new node type.
boxHorizontal(Component...) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
boxVertical(Component...) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
BRANCHES_TABLE_OUTPUT_SLOT - Static variable in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.analyze.AnalyzeSkeleton2D3DAlgorithm
 
BrightSpotsSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Applies Bright spots segmentation
BrightSpotsSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm
 
BrightSpotsSegmentation2DAlgorithm(BrightSpotsSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.BrightSpotsSegmentation2DAlgorithm
Copies the algorithm
BufferedImageUtils - Class in org.hkijena.jipipe.utils
 
BufferedImageUtils() - Constructor for class org.hkijena.jipipe.utils.BufferedImageUtils
 
build() - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer.Builder
 
build() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration.Builder
 
build(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
 
build() - Method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
Returns the finished object Requires following properties to be set: source, field class, getter, setter
build() - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.RowBuilder
Does nothing
build() - Method in class org.hkijena.jipipe.ui.parameters.AdaptiveParameterBuilder
 
builder() - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer
 
Builder() - Constructor for class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo.Deserializer.Builder
 
builder() - Static method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
builder() - Static method in class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess
Creates a new builder
Builder() - Constructor for class org.hkijena.jipipe.api.parameters.JIPipeManualParameterAccess.Builder
 
buildFor(Path, ExpressionVariables) - Static method in class org.hkijena.jipipe.extensions.expressions.variables.PathFilterExpressionParameterVariableSource
 
buildSeries() - Method in class org.hkijena.jipipe.ui.plotbuilder.JIPipePlotSeriesBuilder
Generates a series
buildVariablesSet(ImagePlus, ExpressionVariables) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.parameters.ImageQueryExpressionVariableSource
Builds the proper variable set for an image
BusyCursor - Class in org.hkijena.jipipe.utils.ui
A cursor for a component to indicate that some process is running
BusyCursor(Component) - Constructor for class org.hkijena.jipipe.utils.ui.BusyCursor
 
ByteArrayParameterImageJ2ModuleInput - Class in org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays
 
ByteArrayParameterImageJ2ModuleInput() - Constructor for class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.ByteArrayParameterImageJ2ModuleInput
 
ByteConstantValueImageJ2OutOfBoundsFactoryData - Class in org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant
 
ByteConstantValueImageJ2OutOfBoundsFactoryData() - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant.ByteConstantValueImageJ2OutOfBoundsFactoryData
 
ByteConstantValueImageJ2OutOfBoundsFactoryData(OutOfBoundsConstantValueFactory<?, ?>) - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant.ByteConstantValueImageJ2OutOfBoundsFactoryData
 
ByteConstantValueImageJ2OutOfBoundsFactoryData(ByteConstantValueImageJ2OutOfBoundsFactoryData) - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant.ByteConstantValueImageJ2OutOfBoundsFactoryData
 
ByteParameterImageJ2ModuleInput - Class in org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives
 
ByteParameterImageJ2ModuleInput() - Constructor for class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.ByteParameterImageJ2ModuleInput
 
ByteParameterImageJ2ModuleOutput - Class in org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives
 
ByteParameterImageJ2ModuleOutput() - Constructor for class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.ByteParameterImageJ2ModuleOutput
 
ByteParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.library.primitives
Info for Byte
ByteParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.primitives.ByteParameterTypeInfo
 
BytePrimitiveParameterTypeInfo - Class in org.hkijena.jipipe.extensions.parameters.library.primitives
Info for Byte
BytePrimitiveParameterTypeInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.primitives.BytePrimitiveParameterTypeInfo
 

C

CacheAwareOpenResultsTableInJIPipeDataOperation - Class in org.hkijena.jipipe.extensions.tables.display
 
CacheAwareOpenResultsTableInJIPipeDataOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.display.CacheAwareOpenResultsTableInJIPipeDataOperation
 
CachedImagePlusDataViewerWindow - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
 
CachedImagePlusDataViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String, boolean) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.CachedImagePlusDataViewerWindow
 
CachedImagePlusDataViewerWindow.CustomDataLoader - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
Used to override the data loading behavior
CachedOutputDataSlotListCellRenderer - Class in org.hkijena.jipipe.ui.cache.renderers
Renders a JIPipeDataSlot
CachedOutputDataSlotListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.cache.renderers.CachedOutputDataSlotListCellRenderer
Creates a new renderer
CachedParametersDataViewerWindow - Class in org.hkijena.jipipe.extensions.multiparameters.datatypes
 
CachedParametersDataViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.datatypes.CachedParametersDataViewerWindow
 
CachedPlotViewerWindow - Class in org.hkijena.jipipe.extensions.plots
 
CachedPlotViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String, boolean) - Constructor for class org.hkijena.jipipe.extensions.plots.CachedPlotViewerWindow
 
CachedROIListDataViewerWindow - Class in org.hkijena.jipipe.extensions.imagejdatatypes.display
 
CachedROIListDataViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String, boolean) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.CachedROIListDataViewerWindow
 
CachedSpotCollectionDataViewerWindow - Class in org.hkijena.jipipe.extensions.ijtrackmate.display.spots
 
CachedSpotCollectionDataViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String, boolean) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.display.spots.CachedSpotCollectionDataViewerWindow
 
CachedTableViewerWindow - Class in org.hkijena.jipipe.extensions.tables.display
 
CachedTableViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String, boolean) - Constructor for class org.hkijena.jipipe.extensions.tables.display.CachedTableViewerWindow
 
CachedTextViewerWindow - Class in org.hkijena.jipipe.extensions.strings
Cached viewer for
CachedTextViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String, boolean) - Constructor for class org.hkijena.jipipe.extensions.strings.CachedTextViewerWindow
 
CachedTrackmateAlgorithmViewerWindow - Class in org.hkijena.jipipe.extensions.ijtrackmate.display.algorithms
Cached viewer for
CachedTrackmateAlgorithmViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String, boolean) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.display.algorithms.CachedTrackmateAlgorithmViewerWindow
 
CachedTracksCollectionDataViewerWindow - Class in org.hkijena.jipipe.extensions.ijtrackmate.display.tracks
 
CachedTracksCollectionDataViewerWindow(JIPipeWorkbench, JIPipeDataTableDataSource, String, boolean) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.display.tracks.CachedTracksCollectionDataViewerWindow
 
CacheStateListCellRenderer - Class in org.hkijena.jipipe.ui.cache.renderers
CacheStateListCellRenderer() - Constructor for class org.hkijena.jipipe.ui.cache.renderers.CacheStateListCellRenderer
Creates a new renderer
CacheToNonVirtualRun - Class in org.hkijena.jipipe.ui.data
 
CacheToNonVirtualRun(JIPipeProject) - Constructor for class org.hkijena.jipipe.ui.data.CacheToNonVirtualRun
 
CacheToVirtualRun - Class in org.hkijena.jipipe.ui.data
 
CacheToVirtualRun(JIPipeProject) - Constructor for class org.hkijena.jipipe.ui.data.CacheToVirtualRun
 
calculateCalibration(ImageProcessor, ImageJCalibrationMode, double, double, ImageStatistics) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeDataSlotUI
Calculates the size in grid coordinates
calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeHorizontalDataSlotUI
 
calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeHorizontalNodeUI
 
calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeNodeUI
Calculates the size in grid coordinates
calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeVerticalDataSlotUI
 
calculateGridSize() - Method in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeVerticalNodeUI
 
calculateMaxTabHeight(int) - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
calculateMinimumBoundingRectangle(Roi) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Method based on fitMinRectangle
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdFunction
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdHuang
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdImageJDefault
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdImageJIsoData
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdIntermodes
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdIsoData
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdLi
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdMaxEntropy
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdMean
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdMinError
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdMinimum
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdMoments
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdOtsu
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdPercentile
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdRenyi
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdShanbhag
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdTriangle
 
calculateThreshold(int[]) - Method in class org.hkijena.jipipe.extensions.expressions.functions.statistics.HistogramThresholdYen
 
calibrate(ImageProcessor, ImageJCalibrationMode, double, double, ImageStatistics) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
calibrate(ImagePlus, ImageJCalibrationMode, double, double) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Calibrates the image.
calibrateAxis(ValueAxis, OptionalDoubleParameter, OptionalDoubleParameter) - Static method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Calibrates the axes of a plot, setting min and max values
CalibrationPlugin - Class in org.hkijena.jipipe.extensions.imageviewer.plugins
 
CalibrationPlugin(ImageViewerPanel) - Constructor for class org.hkijena.jipipe.extensions.imageviewer.plugins.CalibrationPlugin
 
canAddInputSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
canAddInputSlot() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canAddOrDeleteNodes(JIPipeWorkbench) - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
canAddOutputSlot() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
canAddOutputSlot() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canAutoPassThrough() - Method in class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm
 
canAutoPassThrough() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
Returns true if the algorithm can automatically apply pass-through This is only possible if there is at most one input and at most one output.
cancel(String) - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
cancel() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
cancel - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
cancel(JIPipeRunnable) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
Cancels a runnable
cancel(boolean) - Method in class org.hkijena.jipipe.utils.InstantFuture
 
CancelledEvent(ProcessUtils.RunCancellationWatchdog) - Constructor for class org.hkijena.jipipe.utils.ProcessUtils.RunCancellationWatchdog.CancelledEvent
 
canClose() - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData
Returns true if the data has no users and thus can be closed
canConnect(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Slow implementation of connection checking that tests for graph cycles
canConnectFast(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Fast implementation of connection checking without copying the graph
canCreateCompatibleInputSlot(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Returns if an input slot with specified type can be created
canCreateCompatibleInputSlot(Class<? extends JIPipeData>) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canCreateCompatibleOutputSlot(Class<? extends JIPipeData>) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Returns if an output slot with specified type can be created
canCreateCompatibleOutputSlot(Class<? extends JIPipeData>) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canExtract() - Method in class org.hkijena.jipipe.api.nodes.categories.InternalNodeTypeCategory
 
canExtract() - Method in interface org.hkijena.jipipe.api.nodes.JIPipeNodeTypeCategory
Returns if the node can be extracted (copied) from the graph
canModifyInputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
canModifyInputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canModifyOutputSlots() - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
 
canModifyOutputSlots() - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canModifySlots(JIPipeWorkbench) - Static method in class org.hkijena.jipipe.ui.JIPipeProjectWorkbench
 
CannyEdgeDetectorAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge
This is the JIPipe version of the ImageJ plugin ...
CannyEdgeDetectorAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.CannyEdgeDetectorAlgorithm
Instantiates a new node type.
CannyEdgeDetectorAlgorithm(CannyEdgeDetectorAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.edge.CannyEdgeDetectorAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.api.nodes.JIPipeAlgorithm
Returns true if the algorithm can apply pass-through.
canPassThrough() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.AnnotateWithAnnotationTable
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.MergeAnnotations
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ExportDataByParameter
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.forms.algorithms.FormGeneratorAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.forms.algorithms.IteratingFormProcessorAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.forms.algorithms.MergingFormProcessorAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.forms.algorithms.SimpleIteratingFormProcessorAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms.DrawMaskAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms.DrawROIAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.overlay.RenderOverlayAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.convert.RoiToRGBAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure.CountROIAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.multiparameters.nodes.ExtractParametersAlgorithm
 
canPassThrough() - Method in class org.hkijena.jipipe.extensions.utils.algorithms.datatable.ExtractTableAlgorithm
 
canRegister() - Method in class org.hkijena.jipipe.api.registries.JIPipeDefaultNodeRegistrationTask
 
canRegister() - Method in interface org.hkijena.jipipe.api.registries.JIPipeNodeRegistrationTask
Returns true if the registration can be done This function should fail as fast as possible
canRegister() - Method in class org.hkijena.jipipe.extensions.jsonextensionloader.JsonExtensionRegistrationTask
 
canRemoveInputSlot(String, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canRemoveOutputSlot(String, boolean) - Method in interface org.hkijena.jipipe.api.data.JIPipeMutableSlotConfiguration
 
canShow(JIPipeDataSlot, JIPipeDataTableMetadataRow, Path) - Method in interface org.hkijena.jipipe.api.data.JIPipeDataImportOperation
Checks if the import is possible
canShowNotification(JIPipeRunWorker) - Method in class org.hkijena.jipipe.ui.running.JIPipeRunQueueNotifier
 
canUserDelete(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns true if the user can delete the algorithm
canUserDelete() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Returns true if a user can delete this algorithm
canUserDisconnect(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns true if the user can disconnect the slots
CanvasEqualizer - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform
 
CanvasEqualizer() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
CanvasEqualizer(CanvasEqualizer) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.CanvasEqualizer
 
CaseFunction - Class in org.hkijena.jipipe.extensions.expressions.functions.control
 
CaseFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.control.CaseFunction
 
CATEGORY_3D - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_ANALYSIS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_ANNOTATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_AUTOMATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_BENCHMARK - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_BINARY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_CELLPROFILER - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_CLASSIFICATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_COLOCALIZATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_COLOR_PROCESSING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_COMPLEXITY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_COOKBOOK - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_DATA_PROCESSING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_DECONVOLUTION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_DEEP_LEARNING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_DENOISING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_DEVELOPMENT - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_DIGITAL_VOLUME_FLATTENING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_DIGITAL_VOLUME_UNROLLING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_ENTROPY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_EXAMPLE_DATA - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_FEATURE_EXTRACTION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_FIJI - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_FILTERING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_FRACTAL_DIMENSION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_GPU - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_GUT - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_HELP - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_IMAGE_ANALYSIS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_IMAGE_ANNOTATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_IMAGE_SCIENCE - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_IMAGEJ2 - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_IMGLIB - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_IMPORT_EXPORT - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_INTEGRAL_IMAGE - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_INTERACTIVE - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_LIFETIME - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_LISP - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_MACHINE_LEARNING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_MATHEMATICAL_MORPHOLOGY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_MATLAB - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_MICROSCOPY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_MICROTUBULES - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_MONTAGE - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_NEUROANATOMY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_NEURON - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_NOISE - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_OBJECT_DETECTION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_OME - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_OPS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_OPTIC_FLOW - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_PARTICLE_ANALYSIS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_PATTERN_RECOGNITION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_PERFUSION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_PHOTOGRAMMETRY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_PHOTOGRAPHY - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_PLOTTING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_PROJECTION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_REGISTRATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_SCIJAVA - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_SCRIPTING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_SEGMENTATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_SKELETON - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_SKELETONIZATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_STACKS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_STATISTICS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_STITCHING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_SUPER_RESOLUTION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_TIME_SIGNAL_ANALYSIS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_TISSUE - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_TRACKEM2 - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_TRACKING - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_TRANSFORM - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_TUTORIAL - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_TUTORIALS - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_UNCATEGORIZED - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_USER_INTERFACE - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CATEGORY_VISUALIZATION - Static variable in class org.hkijena.jipipe.extensions.parameters.library.jipipe.PluginCategoriesEnumParameter
 
CategoryPlotData - Class in org.hkijena.jipipe.extensions.plots.datatypes
Contains data for category plots.
CategoryPlotData() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
Creates a new instance
CategoryPlotData(CategoryPlotData) - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
Creates a copy
CeilingColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a floor function
CeilingColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.CeilingColumnOperation
 
CellposeAlgorithm - Class in org.hkijena.jipipe.extensions.cellpose.algorithms
Improved version of CellposeAlgorithm_Old that utilizes the Cellpose CLI
CellposeAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.CellposeAlgorithm
 
CellposeAlgorithm(CellposeAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.CellposeAlgorithm
 
CellposeAlgorithm_Old - Class in org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated
Deprecated.
New implementation will be CellposeAlgorithm2 that is based around the Cellpose CLI
CellposeAlgorithm_Old(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated.CellposeAlgorithm_Old
Deprecated.
 
CellposeAlgorithm_Old(CellposeAlgorithm_Old) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated.CellposeAlgorithm_Old
Deprecated.
 
CellposeChannelSettings - Class in org.hkijena.jipipe.extensions.cellpose.parameters
 
CellposeChannelSettings() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeChannelSettings
 
CellposeChannelSettings(CellposeChannelSettings) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeChannelSettings
 
CellposeEasyInstaller - Class in org.hkijena.jipipe.extensions.cellpose.installers
 
CellposeEasyInstaller(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.cellpose.installers.CellposeEasyInstaller
 
CellposeExtension - Class in org.hkijena.jipipe.extensions.cellpose
 
CellposeExtension() - Constructor for class org.hkijena.jipipe.extensions.cellpose.CellposeExtension
 
CellposeGPUSettings - Class in org.hkijena.jipipe.extensions.cellpose.parameters
 
CellposeGPUSettings() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeGPUSettings
 
CellposeGPUSettings(CellposeGPUSettings) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeGPUSettings
 
CellposeModel - Enum in org.hkijena.jipipe.extensions.cellpose
 
CellposeModelData - Class in org.hkijena.jipipe.extensions.cellpose.datatypes
Wrapper around Cellpose models
CellposeModelData(Path) - Constructor for class org.hkijena.jipipe.extensions.cellpose.datatypes.CellposeModelData
 
CellposeModelData(byte[], String) - Constructor for class org.hkijena.jipipe.extensions.cellpose.datatypes.CellposeModelData
 
CellposeModelData(CellposeModelData) - Constructor for class org.hkijena.jipipe.extensions.cellpose.datatypes.CellposeModelData
 
CellposeModelImageJExporter - Class in org.hkijena.jipipe.extensions.cellpose.compat
 
CellposeModelImageJExporter() - Constructor for class org.hkijena.jipipe.extensions.cellpose.compat.CellposeModelImageJExporter
 
CellposeModelImageJImporter - Class in org.hkijena.jipipe.extensions.cellpose.compat
 
CellposeModelImageJImporter() - Constructor for class org.hkijena.jipipe.extensions.cellpose.compat.CellposeModelImageJImporter
 
CellposePretrainedModel - Enum in org.hkijena.jipipe.extensions.cellpose
 
cellposeROIJsonToImageJ(Path) - Static method in class org.hkijena.jipipe.extensions.cellpose.CellposeUtils
Converts ROI in a custom Json format to ROIListData
cellposeROIToImageJ(Path) - Static method in class org.hkijena.jipipe.extensions.cellpose.CellposeUtils
Converts a Cellpose ROI to ROIListData according to ...
CellposeSegmentationEnhancementSettings_Old - Class in org.hkijena.jipipe.extensions.cellpose.parameters.deprecated
Deprecated.
CellposeSegmentationEnhancementSettings_Old() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationEnhancementSettings_Old
Deprecated.
 
CellposeSegmentationEnhancementSettings_Old(CellposeSegmentationEnhancementSettings_Old) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationEnhancementSettings_Old
Deprecated.
 
CellposeSegmentationModelSettings_Old - Class in org.hkijena.jipipe.extensions.cellpose.parameters.deprecated
Deprecated.
CellposeSegmentationModelSettings_Old() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationModelSettings_Old
Deprecated.
 
CellposeSegmentationModelSettings_Old(CellposeSegmentationModelSettings_Old) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationModelSettings_Old
Deprecated.
 
CellposeSegmentationOutputSettings - Class in org.hkijena.jipipe.extensions.cellpose.parameters
 
CellposeSegmentationOutputSettings() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeSegmentationOutputSettings
 
CellposeSegmentationOutputSettings(CellposeSegmentationOutputSettings) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeSegmentationOutputSettings
 
CellposeSegmentationOutputSettings_Old - Class in org.hkijena.jipipe.extensions.cellpose.parameters.deprecated
Deprecated.
Used by the old CellposeAlgorithm_Old
CellposeSegmentationOutputSettings_Old() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationOutputSettings_Old
Deprecated.
 
CellposeSegmentationOutputSettings_Old(CellposeSegmentationOutputSettings_Old) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationOutputSettings_Old
Deprecated.
 
CellposeSegmentationPerformanceSettings_Old - Class in org.hkijena.jipipe.extensions.cellpose.parameters.deprecated
Deprecated.
CellposeSegmentationPerformanceSettings_Old() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationPerformanceSettings_Old
Deprecated.
 
CellposeSegmentationPerformanceSettings_Old(CellposeSegmentationPerformanceSettings_Old) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationPerformanceSettings_Old
Deprecated.
 
CellposeSegmentationThresholdSettings - Class in org.hkijena.jipipe.extensions.cellpose.parameters
 
CellposeSegmentationThresholdSettings() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeSegmentationThresholdSettings
 
CellposeSegmentationThresholdSettings(CellposeSegmentationThresholdSettings) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeSegmentationThresholdSettings
 
CellposeSegmentationThresholdSettings_Old - Class in org.hkijena.jipipe.extensions.cellpose.parameters.deprecated
Deprecated.
CellposeSegmentationThresholdSettings_Old() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationThresholdSettings_Old
Deprecated.
 
CellposeSegmentationThresholdSettings_Old(CellposeSegmentationThresholdSettings_Old) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.deprecated.CellposeSegmentationThresholdSettings_Old
Deprecated.
 
CellposeSegmentationTweaksSettings - Class in org.hkijena.jipipe.extensions.cellpose.parameters
 
CellposeSegmentationTweaksSettings() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeSegmentationTweaksSettings
 
CellposeSegmentationTweaksSettings(CellposeSegmentationTweaksSettings) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeSegmentationTweaksSettings
 
CellposeSettings - Class in org.hkijena.jipipe.extensions.cellpose
 
CellposeSettings() - Constructor for class org.hkijena.jipipe.extensions.cellpose.CellposeSettings
 
CellposeSizeModelData - Class in org.hkijena.jipipe.extensions.cellpose.datatypes
Wrapper around Cellpose models
CellposeSizeModelData(Path) - Constructor for class org.hkijena.jipipe.extensions.cellpose.datatypes.CellposeSizeModelData
 
CellposeSizeModelData(byte[], String) - Constructor for class org.hkijena.jipipe.extensions.cellpose.datatypes.CellposeSizeModelData
 
CellposeSizeModelData(CellposeSizeModelData) - Constructor for class org.hkijena.jipipe.extensions.cellpose.datatypes.CellposeSizeModelData
 
CellposeSizeModelImageJExporter - Class in org.hkijena.jipipe.extensions.cellpose.compat
 
CellposeSizeModelImageJExporter() - Constructor for class org.hkijena.jipipe.extensions.cellpose.compat.CellposeSizeModelImageJExporter
 
CellposeSizeModelImageJImporter - Class in org.hkijena.jipipe.extensions.cellpose.compat
 
CellposeSizeModelImageJImporter() - Constructor for class org.hkijena.jipipe.extensions.cellpose.compat.CellposeSizeModelImageJImporter
 
CellposeTrainingAlgorithm - Class in org.hkijena.jipipe.extensions.cellpose.algorithms
 
CellposeTrainingAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.CellposeTrainingAlgorithm
 
CellposeTrainingAlgorithm(CellposeTrainingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.CellposeTrainingAlgorithm
 
CellposeTrainingAlgorithm_Old - Class in org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated
Deprecated.
CellposeTrainingAlgorithm_Old(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated.CellposeTrainingAlgorithm_Old
Deprecated.
 
CellposeTrainingAlgorithm_Old(CellposeTrainingAlgorithm_Old) - Constructor for class org.hkijena.jipipe.extensions.cellpose.algorithms.deprecated.CellposeTrainingAlgorithm_Old
Deprecated.
 
CellposeTrainingTweaksSettings - Class in org.hkijena.jipipe.extensions.cellpose.parameters
 
CellposeTrainingTweaksSettings() - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeTrainingTweaksSettings
 
CellposeTrainingTweaksSettings(CellposeTrainingTweaksSettings) - Constructor for class org.hkijena.jipipe.extensions.cellpose.parameters.CellposeTrainingTweaksSettings
 
CellposeUtils - Class in org.hkijena.jipipe.extensions.cellpose
 
center - Variable in class org.hkijena.jipipe.utils.PointRange
 
CenteredRectangleImageJ2ShapeData - Class in org.hkijena.jipipe.extensions.imagej2.datatypes.shapes
 
CenteredRectangleImageJ2ShapeData() - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.CenteredRectangleImageJ2ShapeData
 
CenteredRectangleImageJ2ShapeData(RectangleShape) - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.CenteredRectangleImageJ2ShapeData
 
CenteredRectangleImageJ2ShapeData(CenteredRectangleImageJ2ShapeData) - Constructor for class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.CenteredRectangleImageJ2ShapeData
 
centerImage() - Method in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanelCanvas
 
centerX - Variable in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.HoughLines
 
centerY - Variable in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.HoughLines
 
ChamferDistanceMap2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap
 
ChamferDistanceMap2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap.ChamferDistanceMap2DAlgorithm
Instantiates a new node type.
ChamferDistanceMap2DAlgorithm(ChamferDistanceMap2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap.ChamferDistanceMap2DAlgorithm
Instantiates a new node type.
ChamferDistanceMap3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap
 
ChamferDistanceMap3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap.ChamferDistanceMap3DAlgorithm
Instantiates a new node type.
ChamferDistanceMap3DAlgorithm(ChamferDistanceMap3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.math.distancemap.ChamferDistanceMap3DAlgorithm
Instantiates a new node type.
changed(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener
All-in-one event for insertion, removal, change
ChangedEvent(JIPipeHistoryJournal) - Constructor for class org.hkijena.jipipe.api.history.JIPipeHistoryJournal.ChangedEvent
 
changedUpdate(DocumentEvent) - Method in class org.hkijena.jipipe.ui.components.DocumentChangeListener
 
changedUpdate(DocumentEvent, Shape, ViewFactory) - Method in class org.hkijena.jipipe.ui.components.html.ExtendedImageView
Invoked when the Elements attributes have changed.
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify
 
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify.ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm
 
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm(ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify.ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm
 
ChangeRoiNameFromExpressionsAndMeasurementsAlgorithm.VariableSource - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify
 
ChangeRoiPropertiesAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify
Wrapper around RoiManager
ChangeRoiPropertiesAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify.ChangeRoiPropertiesAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesAlgorithm(ChangeRoiPropertiesAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify.ChangeRoiPropertiesAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesFromAnnotationsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify
Wrapper around RoiManager
ChangeRoiPropertiesFromAnnotationsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify.ChangeRoiPropertiesFromAnnotationsAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesFromAnnotationsAlgorithm(ChangeRoiPropertiesFromAnnotationsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify.ChangeRoiPropertiesFromAnnotationsAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesFromExpressionsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify
Wrapper around RoiManager
ChangeRoiPropertiesFromExpressionsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify.ChangeRoiPropertiesFromExpressionsAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesFromExpressionsAlgorithm(ChangeRoiPropertiesFromExpressionsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify.ChangeRoiPropertiesFromExpressionsAlgorithm
Instantiates a new node type.
ChangeRoiPropertiesFromExpressionsAlgorithm.VariableSource - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify
 
Channel() - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.OverlayImagesAlgorithm.Channel
Deprecated.
 
Channel(Color) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.OverlayImagesAlgorithm.Channel
Deprecated.
 
Channel(Color, double) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.OverlayImagesAlgorithm.Channel
Deprecated.
 
Channel(OverlayImagesAlgorithm.Channel) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.OverlayImagesAlgorithm.Channel
Deprecated.
 
channelsToRGB(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converted a 3-channel image into RGB (reducing the dimensionality)
checkAndAskIfFileExists(Component, Path, String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Checks if a file exists and asks the user if it should be overwritten
CheckBoxAction - Class in org.hkijena.jipipe.ui.components.ribbon
 
CheckBoxAction(String, String) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.CheckBoxAction
 
CheckBoxAction(String, String, boolean, Consumer<JCheckBox>) - Constructor for class org.hkijena.jipipe.ui.components.ribbon.CheckBoxAction
 
CheckBoxIcon - Class in org.hkijena.jipipe.utils.ui
Taken from MetalIconFactory
CheckBoxIcon(Color) - Constructor for class org.hkijena.jipipe.utils.ui.CheckBoxIcon
 
CheckBoxMenuItemIcon - Class in org.hkijena.jipipe.utils.ui
Taken from MetalIconFactory
CheckBoxMenuItemIcon(Color) - Constructor for class org.hkijena.jipipe.utils.ui.CheckBoxMenuItemIcon
 
checkExtensionDependencies(JIPipeWorkbench) - Static method in class org.hkijena.jipipe.ui.JIPipeJsonExtensionWindow
 
checkIfWithin(Object, double, double, double, boolean, boolean) - Method in class org.hkijena.jipipe.api.JIPipeIssueReport
Reports as invalid if the value is not within the limits
checkNonEmpty(Object, Object) - Method in class org.hkijena.jipipe.api.JIPipeIssueReport
Reports as invalid if the string value is null or empty
checkNonNull(Object, Object) - Method in class org.hkijena.jipipe.api.JIPipeIssueReport
Reports as invalid if the value is null
checkPythonSettings(JIPipeIssueReport) - Static method in class org.hkijena.jipipe.extensions.cellpose.CellposeSettings
Checks if the Python settings are valid or reports an invalid state
checkPythonSettings(JIPipeIssueReport) - Static method in class org.hkijena.jipipe.extensions.omnipose.OmniposeSettings
Checks if the Python settings are valid or reports an invalid state
checkPythonSettings(JIPipeIssueReport) - Static method in class org.hkijena.jipipe.extensions.python.PythonExtensionSettings
Checks if the Python settings are valid or reports an invalid state
checkRSettings() - Static method in class org.hkijena.jipipe.extensions.r.RExtensionSettings
Checks if the R settings are valid or throws an exception
checkRSettings(JIPipeIssueReport) - Static method in class org.hkijena.jipipe.extensions.r.RExtensionSettings
Checks if the R settings are valid or reports an invalid state
checkScriptParametersValidity(JIPipeCustomParameterCollection, JIPipeIssueReport) - Static method in class org.hkijena.jipipe.utils.scripting.JythonUtils
 
checkScriptValidity(String, JIPipeCustomParameterCollection, JIPipeIssueReport) - Static method in class org.hkijena.jipipe.utils.scripting.JythonUtils
 
checkSyntax(String) - Method in class org.hkijena.jipipe.extensions.expressions.DefaultExpressionEvaluator
Checks the syntax of an expression.
checkUpdateSites(JIPipeRegistryIssues, List<JIPipeDependency>, Progress, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.JIPipe
Checks the update sites of all extensions and stores the results in the issues
choosePath() - Method in class org.hkijena.jipipe.ui.components.PathEditor
Opens the file chooser
CircularHoughSegmentation2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Segments using a Hough circle transform
CircularHoughSegmentation2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.CircularHoughSegmentation2DAlgorithm
 
CircularHoughSegmentation2DAlgorithm(CircularHoughSegmentation2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.CircularHoughSegmentation2DAlgorithm
Copies the algorithm
CLAHEContrastEnhancer - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast
Applies CLAHE image enhancing
CLAHEContrastEnhancer(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer
 
CLAHEContrastEnhancer(CLAHEContrastEnhancer) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.contrast.CLAHEContrastEnhancer
Copies the algorithm
ClampFunction - Class in org.hkijena.jipipe.extensions.expressions.functions.math
 
ClampFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.math.ClampFunction
 
ClampNegativeColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a min(0, x) function
ClampNegativeColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ClampNegativeColumnOperation
 
ClampPositiveColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a max(0, x) function
ClampPositiveColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.ClampPositiveColumnOperation
 
ClassFilter - Interface in org.hkijena.jipipe.utils.classfilters
 
ClassicWatershedSegmentationAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment
 
ClassicWatershedSegmentationAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment.ClassicWatershedSegmentationAlgorithm
 
ClassicWatershedSegmentationAlgorithm(ClassicWatershedSegmentationAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.segment.ClassicWatershedSegmentationAlgorithm
 
CleanBackupsRun - Class in org.hkijena.jipipe.extensions.settings
 
CleanBackupsRun(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.settings.CleanBackupsRun
 
cleanup(Map<String, Path>, Map<String, Path>, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.python.PythonUtils
 
clear() - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Removes all rows from this table
clear() - Method in class org.hkijena.jipipe.api.data.JIPipeDataTableMetadata
 
clear() - Method in class org.hkijena.jipipe.api.history.JIPipeDedicatedGraphHistoryJournal
 
clear() - Method in class org.hkijena.jipipe.api.history.JIPipeDummyGraphHistoryJournal
 
clear() - Method in interface org.hkijena.jipipe.api.history.JIPipeHistoryJournal
Clears the journal
clear() - Method in class org.hkijena.jipipe.api.history.JIPipeProjectHistoryJournal
 
clear(UUID) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Removes an algorithm from the cache
clear(UUID, JIPipeProjectCacheState) - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Removes an algorithm from the cache
clear() - Method in class org.hkijena.jipipe.api.JIPipeProjectCache
Removes everything from the cache
clear() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Clears this graph
clear() - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Removes all parameters
clear() - Method in class org.hkijena.jipipe.extensions.parameters.library.table.ParameterTable
Clears the table
clear() - Method in class org.hkijena.jipipe.ui.components.FormPanel
Removes all components
clear() - Method in class org.hkijena.jipipe.ui.components.MessagePanel
 
clear() - Method in class org.hkijena.jipipe.ui.components.ribbon.Ribbon
Clears the ribbon.
clear() - Method in class org.hkijena.jipipe.ui.running.JIPipeLogs
 
clearAll() - Method in class org.hkijena.jipipe.api.JIPipeIssueReport
Clears all the issues in this report and all related reports
clearCurrentMask() - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.maskdrawer.MaskDrawerPlugin
 
clearCurrentPath() - Method in class org.hkijena.jipipe.api.JIPipeIssueReport
Clears issues of the current path
clearData() - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Removes all rows from this table
clearInputSlots(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Removes all input slots
clearLocations() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Removes all location information added via setLocationWithin()
clearLog() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfo
 
clearOutputSlots(boolean) - Method in class org.hkijena.jipipe.api.data.JIPipeDefaultMutableSlotConfiguration
Removes all output slots
clearPreviewCache() - Method in class org.hkijena.jipipe.ui.datatable.JIPipeExtendedMultiDataTableModel
 
clearQueue() - Method in class org.hkijena.jipipe.ui.running.JIPipeRunnerQueue
Removes all enqueued (but not running tasks)
clearROIs(boolean) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.roimanager.ROIManagerPlugin
 
clearSchedule(String) - Method in class org.hkijena.jipipe.api.registries.JIPipeExtensionRegistry
 
clearSearch() - Method in class org.hkijena.jipipe.ui.components.search.SearchBox
Clears the search field
clearSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
Clears the list of selected algorithms
clearSelection() - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphEditorUI
Clears the algorithm selection
clearSeries() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Removes all series
clearSlotData() - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Clears all data slots
CLIIJ2DataToImageWindowImageJExporter - Class in org.hkijena.jipipe.extensions.clij2.compat
 
CLIIJ2DataToImageWindowImageJExporter() - Constructor for class org.hkijena.jipipe.extensions.clij2.compat.CLIIJ2DataToImageWindowImageJExporter
 
CLIJ2DataFromImageWindowImageJImporter - Class in org.hkijena.jipipe.extensions.clij2.compat
 
CLIJ2DataFromImageWindowImageJImporter() - Constructor for class org.hkijena.jipipe.extensions.clij2.compat.CLIJ2DataFromImageWindowImageJImporter
 
Clij2ExecuteKernelIterating - Class in org.hkijena.jipipe.extensions.clij2.algorithms
 
Clij2ExecuteKernelIterating(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
Clij2ExecuteKernelIterating(Clij2ExecuteKernelIterating) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelIterating
 
Clij2ExecuteKernelSimpleIterating - Class in org.hkijena.jipipe.extensions.clij2.algorithms
 
Clij2ExecuteKernelSimpleIterating(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
Clij2ExecuteKernelSimpleIterating(Clij2ExecuteKernelSimpleIterating) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2ExecuteKernelSimpleIterating
 
Clij2PullAlgorithm - Class in org.hkijena.jipipe.extensions.clij2.algorithms
 
Clij2PullAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PullAlgorithm
 
Clij2PullAlgorithm(Clij2PullAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PullAlgorithm
 
Clij2PushAlgorithm - Class in org.hkijena.jipipe.extensions.clij2.algorithms
 
Clij2PushAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PushAlgorithm
 
Clij2PushAlgorithm(Clij2PushAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.clij2.algorithms.Clij2PushAlgorithm
 
CLIJCommandNode - Class in org.hkijena.jipipe.extensions.clij2
 
CLIJCommandNode(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJCommandNode
 
CLIJCommandNode(CLIJCommandNode) - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJCommandNode
 
CLIJCommandNodeInfo - Class in org.hkijena.jipipe.extensions.clij2
 
CLIJCommandNodeInfo(Context, PluginInfo<CLIJMacroPlugin>, JIPipeProgressInfo) - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJCommandNodeInfo
 
CLIJCommandNodeInfo.OutputTableColumnInfo - Class in org.hkijena.jipipe.extensions.clij2
 
CLIJControlPanel - Class in org.hkijena.jipipe.extensions.clij2.ui
Graphical control panel for CLIJ
CLIJControlPanel(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.clij2.ui.CLIJControlPanel
 
CLIJControlPanelJIPipeMenuExtension - Class in org.hkijena.jipipe.extensions.clij2.ui
Adds a menu item that allows to control CLIJ
CLIJControlPanelJIPipeMenuExtension(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.clij2.ui.CLIJControlPanelJIPipeMenuExtension
Creates a new instance
CLIJExtension - Class in org.hkijena.jipipe.extensions.clij2
Integrates CLIJ
CLIJExtension() - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJExtension
 
CLIJImageData - Class in org.hkijena.jipipe.extensions.clij2.datatypes
Contains a CLIJ image
CLIJImageData(ClearCLBuffer) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
Initializes a new instance from an existing buffer
CLIJImageData(ImagePlusData) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
Initializes an instance by copying data from ImagePlusData
CLIJImageData(CLIJImageData) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
Makes a copy
CLIJImageToImagePlusDataConverter - Class in org.hkijena.jipipe.extensions.clij2.datatypes
Converter from CLIJImageData to ImagePlusData
CLIJImageToImagePlusDataConverter(Class<? extends JIPipeData>) - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter
 
CLIJImageViewerCustomDataLoader - Class in org.hkijena.jipipe.extensions.clij2.datatypes
 
CLIJImageViewerCustomDataLoader() - Constructor for class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageViewerCustomDataLoader
 
CLIJSettings - Class in org.hkijena.jipipe.extensions.clij2
Settings for CLIJ
CLIJSettings() - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJSettings
 
CLIJSettings.ContrastEnhancerSettings - Class in org.hkijena.jipipe.extensions.clij2
 
cloneTableModel(DefaultTableModel) - Static method in class org.hkijena.jipipe.utils.TableUtils
Copies a table
close() - Method in interface org.hkijena.jipipe.api.data.JIPipeData
 
close() - Method in class org.hkijena.jipipe.api.data.JIPipeVirtualData
 
close() - Method in class org.hkijena.jipipe.api.data.storage.JIPipeFileSystemReadDataStorage
 
close() - Method in class org.hkijena.jipipe.api.data.storage.JIPipeFileSystemWriteDataStorage
 
close() - Method in class org.hkijena.jipipe.api.data.storage.JIPipeZIPReadDataStorage
 
close() - Method in class org.hkijena.jipipe.api.data.storage.JIPipeZIPWriteDataStorage
 
close() - Method in class org.hkijena.jipipe.api.JIPipeProgressInfoOutputStream
 
close() - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageData
 
close() - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROGateway
 
close() - Method in class org.hkijena.jipipe.extensions.omero.util.OMEROImageUploader
 
close() - Method in class org.hkijena.jipipe.utils.IJLogToJIPipeProgressInfoPump
 
close() - Method in class org.hkijena.jipipe.utils.ui.BusyCursor
 
CloseAllImageJWindowsTool - Class in org.hkijena.jipipe.extensions.tools
 
CloseAllImageJWindowsTool(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.CloseAllImageJWindowsTool
Creates a new instance
closeAllTabs(boolean) - Method in class org.hkijena.jipipe.ui.components.tabs.DocumentTabPane
Closes all tabs
closeAllTabsExcept(DocumentTabPane.DocumentTab, boolean) - Method in class org.hkijena.jipipe.ui.components.tabs.DocumentTabPane
Closes all tabs except the provided one.
closeMessage() - Method in class org.hkijena.jipipe.ui.components.MessagePanel.Message
 
closeTab(DocumentTabPane.DocumentTab, boolean) - Method in class org.hkijena.jipipe.ui.components.tabs.DocumentTabPane
Closes a tab.
closeTab(DocumentTabPane.DocumentTab) - Method in class org.hkijena.jipipe.ui.components.tabs.DocumentTabPane
Closes the tab.
collapse(IOInterfaceAlgorithm) - Static method in class org.hkijena.jipipe.api.compartments.algorithms.IOInterfaceAlgorithm
Removes the interface and directly connects the inputs and outputs
CollapseIOInterfaceNodeUIContextAction - Class in org.hkijena.jipipe.ui.grapheditor.general.contextmenu
 
CollapseIOInterfaceNodeUIContextAction() - Constructor for class org.hkijena.jipipe.ui.grapheditor.general.contextmenu.CollapseIOInterfaceNodeUIContextAction
 
Coloc2Node - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization
 
Coloc2Node(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization.Coloc2Node
 
Coloc2Node(Coloc2Node) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization.Coloc2Node
 
Coloc2Node.Settings - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization
 
ColocResult(DataContainer<T>, AnalysisResults<T>) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization.CustomColoc2.ColocResult
 
COLOR_CONSTANT - Static variable in class org.hkijena.jipipe.extensions.expressions.ui.ExpressionBuilderUI
 
COLOR_FUNCTION - Static variable in class org.hkijena.jipipe.extensions.expressions.ui.ExpressionBuilderUI
 
COLOR_GLOBAL - Static variable in class org.hkijena.jipipe.extensions.nodetemplate.JIPipeNodeTemplateListCellRenderer
 
COLOR_MAP - Static variable in class org.hkijena.jipipe.utils.ColorUtils
 
COLOR_OPERATOR - Static variable in class org.hkijena.jipipe.extensions.expressions.ui.ExpressionBuilderUI
 
COLOR_PROJECT - Static variable in class org.hkijena.jipipe.extensions.nodetemplate.JIPipeNodeTemplateListCellRenderer
 
COLOR_SELECTED - Static variable in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanelDisplayRangeControl.TrackRenderer
 
COLOR_STRING - Static variable in class org.hkijena.jipipe.extensions.expressions.ui.ExpressionBuilderUI
 
COLOR_UNSELECTED - Static variable in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanelDisplayRangeControl.TrackRenderer
 
COLOR_VARIABLE - Static variable in class org.hkijena.jipipe.extensions.expressions.ui.ExpressionBuilderUI
 
ColorChooserButton - Class in org.hkijena.jipipe.ui.components
 
ColorChooserButton() - Constructor for class org.hkijena.jipipe.ui.components.ColorChooserButton
 
ColorChooserButton(String) - Constructor for class org.hkijena.jipipe.ui.components.ColorChooserButton
 
ColorChooserButton.ColorChosenEvent - Class in org.hkijena.jipipe.ui.components
 
ColorChosenEvent(ColorChooserButton, Color) - Constructor for class org.hkijena.jipipe.ui.components.ColorChooserButton.ColorChosenEvent
 
ColorDeserializer - Class in org.hkijena.jipipe.extensions.parameters.library.colors
Deserializer for Color
ColorDeserializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorDeserializer
 
ColorIcon - Interface in org.hkijena.jipipe.ui.components.icons
 
ColorImageData - Interface in org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color
Annotates a data type as color image
ColorListParameter - Class in org.hkijena.jipipe.extensions.parameters.library.colors
 
ColorListParameter() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorListParameter
 
ColorListParameter(Collection<Color>) - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorListParameter
 
ColorMap - Enum in org.hkijena.jipipe.extensions.parameters.library.colors
All available color maps
ColorMap - Enum in org.hkijena.jipipe.extensions.plots.utils
 
ColorMapEnumItemInfo - Class in org.hkijena.jipipe.extensions.parameters.library.colors
EnumItemInfo implementation for ColorMap
ColorMapEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorMapEnumItemInfo
Creates a new instance
ColorMapEnumItemInfo - Class in org.hkijena.jipipe.extensions.plots.utils
 
ColorMapEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.plots.utils.ColorMapEnumItemInfo
 
ColorMapIcon - Class in org.hkijena.jipipe.extensions.parameters.library.colors
Icon that renders a color map entry
ColorMapIcon() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorMapIcon
Creates a 16x16 black icon
ColorMapIcon(int, int) - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorMapIcon
Creates a viridis icon
ColorMapIcon(int, int, ColorMap) - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorMapIcon
 
ColorMapIcon - Class in org.hkijena.jipipe.extensions.plots.utils
 
ColorMapIcon(int, int, ColorMap) - Constructor for class org.hkijena.jipipe.extensions.plots.utils.ColorMapIcon
 
ColorMapSupplier - Class in org.hkijena.jipipe.extensions.plots.utils
Provides a color palette
ColorMapSupplier(Paint[]) - Constructor for class org.hkijena.jipipe.extensions.plots.utils.ColorMapSupplier
 
ColorParameterEditorUI - Class in org.hkijena.jipipe.extensions.parameters.library.colors
Parameter editor for String
ColorParameterEditorUI(JIPipeWorkbench, JIPipeParameterAccess) - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorParameterEditorUI
 
ColorPixel5DExpressionParameterVariableSource - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util
Variable source that allows to address x, y
ColorPixel5DExpressionParameterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.ColorPixel5DExpressionParameterVariableSource
 
ColorRoiByNameAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify
 
ColorRoiByNameAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify.ColorRoiByNameAlgorithm
Instantiates a new node type.
ColorRoiByNameAlgorithm(ColorRoiByNameAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify.ColorRoiByNameAlgorithm
Instantiates a new node type.
ColorRoiByStatisticsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify
Wrapper around RoiManager
ColorRoiByStatisticsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify.ColorRoiByStatisticsAlgorithm
Instantiates a new node type.
ColorRoiByStatisticsAlgorithm(ColorRoiByStatisticsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.modify.ColorRoiByStatisticsAlgorithm
Instantiates a new node type.
ColorSerializer - Class in org.hkijena.jipipe.extensions.parameters.library.colors
Serializer for Color
ColorSerializer() - Constructor for class org.hkijena.jipipe.extensions.parameters.library.colors.ColorSerializer
 
ColorSpace - Interface in org.hkijena.jipipe.extensions.imagejdatatypes.colorspace
A class that governs conversion between color spaces
ColorSpaceConverterAlgorithm - Class in org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color
 
ColorSpaceConverterAlgorithm(JIPipeNodeInfo, Class<? extends ImagePlusData>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color.ColorSpaceConverterAlgorithm
 
ColorSpaceConverterAlgorithm(ColorSpaceConverterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.color.ColorSpaceConverterAlgorithm
 
ColorThresholdExpression2D - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color
 
ColorThresholdExpression2D(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color.ColorThresholdExpression2D
 
ColorThresholdExpression2D(ColorThresholdExpression2D) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.color.ColorThresholdExpression2D
 
ColorToGreyscaleExpression2D - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
 
ColorToGreyscaleExpression2D(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ColorToGreyscaleExpression2D
 
ColorToGreyscaleExpression2D(ColorToGreyscaleExpression2D) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.ColorToGreyscaleExpression2D
 
colorToHexString(Color) - Static method in class org.hkijena.jipipe.utils.ColorUtils
Converts a color to a Hex string
ColorUtils - Class in org.hkijena.jipipe.utils
 
ColorUtils() - Constructor for class org.hkijena.jipipe.utils.ColorUtils
 
ColorUtils.GradientStop - Class in org.hkijena.jipipe.utils
 
Column() - Constructor for class org.hkijena.jipipe.extensions.multiparameters.nodes.GenerateParametersFromExpressionAlgorithm.Column
 
Column(GenerateParametersFromExpressionAlgorithm.Column) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.nodes.GenerateParametersFromExpressionAlgorithm.Column
 
column - Variable in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData.Index
 
ColumnContentType - Enum in org.hkijena.jipipe.extensions.tables
Available column content types
ColumnOperation - Interface in org.hkijena.jipipe.extensions.tables
An operation on a TableColumn
ColumnOperationAdapterFunction - Class in org.hkijena.jipipe.extensions.expressions.functions
ColumnOperationAdapterFunction(ColumnOperation, String) - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.ColumnOperationAdapterFunction
 
ColumnOperationEntry(String, ColumnOperation, String, String, String) - Constructor for class org.hkijena.jipipe.api.registries.JIPipeExpressionRegistry.ColumnOperationEntry
Creates a new entry
ColumnsToAnnotationsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.columns
 
ColumnsToAnnotationsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ColumnsToAnnotationsAlgorithm
 
ColumnsToAnnotationsAlgorithm(ColumnsToAnnotationsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ColumnsToAnnotationsAlgorithm
 
ColumnToNumericAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.columns
Algorithm that removes columns
ColumnToNumericAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ColumnToNumericAlgorithm
Creates a new instance
ColumnToNumericAlgorithm(ColumnToNumericAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ColumnToNumericAlgorithm
Creates a copy
ColumnToStringAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.columns
Algorithm that removes columns
ColumnToStringAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ColumnToStringAlgorithm
Creates a new instance
ColumnToStringAlgorithm(ColumnToStringAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ColumnToStringAlgorithm
Creates a copy
CombineChannelsToRGBAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color
 
CombineChannelsToRGBAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.CombineChannelsToRGBAlgorithm
 
CombineChannelsToRGBAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.color.CombineChannelsToRGBAlgorithm
 
combineSlices(Map<ImageSliceIndex, ImageProcessor>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Combines the slices in the map into one image.
compare(T, T) - Method in class org.hkijena.jipipe.utils.NaturalOrderComparator
 
comparePlugins(PluginInfo<?>, PluginInfo<?>) - Static method in class org.hkijena.jipipe.JIPipe
Compares two plugins and sorts them by priority
comparePriority(JIPipeParameterAccess, JIPipeParameterAccess) - Static method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterAccess
Compares the priority
compareTo(JIPipeTextAnnotation) - Method in class org.hkijena.jipipe.api.annotation.JIPipeTextAnnotation
 
compareTo(JIPipeDataInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataInfo
 
compareTo(JIPipeProjectCacheState) - Method in class org.hkijena.jipipe.api.JIPipeProjectCacheState
 
compareTo(JIPipeDataBatch) - Method in class org.hkijena.jipipe.api.nodes.JIPipeDataBatch
 
compareTo(JIPipeMergingDataBatch) - Method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatch
 
compareTo(JIPipeNotification) - Method in class org.hkijena.jipipe.api.notifications.JIPipeNotification
 
compareTo(JIPipeParameterTypeInfo) - Method in interface org.hkijena.jipipe.api.parameters.JIPipeParameterTypeInfo
 
compareTo(HoughLines.HoughLine) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.utils.HoughLines.HoughLine
 
compareTo(ColorUtils.GradientStop) - Method in class org.hkijena.jipipe.utils.ColorUtils.GradientStop
 
compareTo(RankedData<T>) - Method in class org.hkijena.jipipe.utils.search.RankedData
 
compareVersions(String, String) - Static method in class org.hkijena.jipipe.utils.StringUtils
Compares two version strings.
CompartmentAddedEvent(JIPipeProjectCompartment) - Constructor for class org.hkijena.jipipe.api.JIPipeProject.CompartmentAddedEvent
 
CompartmentNodeTypeCategory - Class in org.hkijena.jipipe.api.compartments.algorithms
 
CompartmentNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.compartments.algorithms.CompartmentNodeTypeCategory
 
CompartmentRemovedEvent(JIPipeProjectCompartment, UUID) - Constructor for class org.hkijena.jipipe.api.JIPipeProject.CompartmentRemovedEvent
 
ComponentListCellRenderer<T extends Component> - Class in org.hkijena.jipipe.ui.components.renderers
 
ComponentListCellRenderer(Icon) - Constructor for class org.hkijena.jipipe.ui.components.renderers.ComponentListCellRenderer
 
composeInheritanceConversions(Map<JIPipeDataInfo, JIPipeDataInfo>, Map<JIPipeDataInfo, JIPipeDataInfo>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
Creates the composition of two inheritance conversions.
composePixel(int...) - Method in interface org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.ColorSpace
Converts an array of channel values into a pixel
composePixel(int...) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.GreyscaleColorSpace
 
composePixel(int...) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.HSBColorSpace
 
composePixel(int...) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.IgnoreColorSpace
 
composePixel(int...) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.LABColorSpace
 
composePixel(int...) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.RGBColorSpace
 
composeRawInheritanceConversions(Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>, Map<Class<? extends JIPipeData>, Class<? extends JIPipeData>>) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
Creates the composition of two inheritance conversions.
computeDefaultBarWidth() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration.ScaleBarGenerator
There is no hard codded value for the width of the scalebar, when the plugin is called for the first time in an ImageJ instance, a defautl value for the width will be computed by this method.
computeEdgeFeatures(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.datatypes.TrackCollectionData
 
computeFileSHA1(File) - Static method in class org.hkijena.jipipe.utils.PathUtils
Computes the SHA1 of a file
computeTrackFeatures(JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.datatypes.TrackCollectionData
 
ConcatenateByParameter - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
ConcatenateByParameter(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter
 
ConcatenateByParameter(ConcatenateByParameter) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenateByParameter
Copies the algorithm
ConcatenatePaths - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
ConcatenatePaths(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenatePaths
 
ConcatenatePaths(ConcatenatePaths) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConcatenatePaths
Copies the algorithm
ConditionalInverterAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
 
ConditionalInverterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.ConditionalInverterAlgorithm
 
ConditionalInverterAlgorithm(ConditionalInverterAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.ConditionalInverterAlgorithm
 
ConditionalInverterAlgorithm.VariableSource - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
 
ConditionValuePair() - Constructor for class org.hkijena.jipipe.ui.parameters.AdaptiveParameterBuilder.ConditionValuePair
 
ConditionValuePairUI(AdaptiveParameterBuilder, AdaptiveParameterBuilder.ConditionValuePair) - Constructor for class org.hkijena.jipipe.ui.parameters.AdaptiveParameterBuilder.ConditionValuePairUI
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.cellpose.installers.MinicondaCellposeEnvInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.cellpose.installers.MinicondaCellposeGPUEnvInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.cellpose.installers.PortableCellposeEnvInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.cellpose.installers.PortableCellposeGPUEnvInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.installers.BasicMinicondaEnvPythonInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.installers.BasicPortableEnvPythonInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.installers.MinicondaEnvPythonInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.installers.PortableEnvPythonInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.installers.SelectCondaEnvPythonInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.installers.SelectSystemPythonInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.installers.SelectVirtualEnvPythonInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.python.PythonPackageLibraryEnvironmentInstaller.Configuration
 
Configuration() - Constructor for class org.hkijena.jipipe.extensions.r.installers.REnvInstaller.Configuration
 
configure(ImageJExportParameters) - Method in class org.hkijena.jipipe.extensions.parameters.library.references.ImageJDataExportOperationRef
Overrides parameters if enabled
configure(ImageJImportParameters) - Method in class org.hkijena.jipipe.extensions.parameters.library.references.ImageJDataImportOperationRef
Overrides parameters if enabled
configure() - Method in class org.hkijena.jipipe.extensions.python.installers.BasicMinicondaEnvPythonInstaller
UI configuration
configure() - Method in class org.hkijena.jipipe.extensions.python.installers.BasicPortableEnvPythonInstaller
UI configuration
configure() - Method in class org.hkijena.jipipe.extensions.python.PythonPackageLibraryEnvironmentInstaller
UI configuration
configureDefaultImageJAdapters(Class<? extends JIPipeData>, String, String) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Sets the default ImageJ adapters
configureDefaultImageJAdapters(Class<? extends JIPipeData>, ImageJDataImporter, ImageJDataExporter) - Method in class org.hkijena.jipipe.JIPipeDefaultJavaExtension
Sets the default ImageJ adapters
confirmResetParameters(JIPipeWorkbench, String) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
ConflictDialog - Class in org.hkijena.jipipe.ui.ijupdater
Copy of ConflictDialog because the original one expects an UpdaterFrame
ConflictDialog(Window, String) - Constructor for class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
conflictList - Variable in class org.hkijena.jipipe.ui.ijupdater.ConflictDialog
 
conflicts - Variable in class org.hkijena.jipipe.ui.ijupdater.ResolveDependencies
 
connect(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Connects an output slot to an input slot.
connect(JIPipeDataSlot, JIPipeDataSlot, boolean) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Connects an output slot to an input slot.
connectCompartments(JIPipeProjectCompartment, JIPipeProjectCompartment) - Method in class org.hkijena.jipipe.api.JIPipeProject
Connects two compartments
connectDismissTo(JIPipeNotificationInbox) - Method in class org.hkijena.jipipe.api.notifications.JIPipeNotificationInbox
Connects all dismisses in this notification inbox to another notification inbox
ConnectedComponentsLabeling2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
 
ConnectedComponentsLabeling2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.ConnectedComponentsLabeling2DAlgorithm
Instantiates a new node type.
ConnectedComponentsLabeling2DAlgorithm(ConnectedComponentsLabeling2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.ConnectedComponentsLabeling2DAlgorithm
Instantiates a new node type.
ConnectedComponentsLabeling3DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
 
ConnectedComponentsLabeling3DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.ConnectedComponentsLabeling3DAlgorithm
Instantiates a new node type.
ConnectedComponentsLabeling3DAlgorithm(ConnectedComponentsLabeling3DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.ConnectedComponentsLabeling3DAlgorithm
Instantiates a new node type.
connectSlot(JIPipeDataSlot, JIPipeDataSlot) - Method in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeDataSlotUI
Connects the two slots
CONSTANT_E - Static variable in class org.hkijena.jipipe.extensions.expressions.DefaultExpressionEvaluator
 
CONSTANT_FALSE - Static variable in class org.hkijena.jipipe.extensions.expressions.DefaultExpressionEvaluator
 
CONSTANT_NULL - Static variable in class org.hkijena.jipipe.extensions.expressions.DefaultExpressionEvaluator
 
CONSTANT_PI - Static variable in class org.hkijena.jipipe.extensions.expressions.DefaultExpressionEvaluator
 
CONSTANT_TAU - Static variable in class org.hkijena.jipipe.extensions.expressions.DefaultExpressionEvaluator
 
CONSTANT_TRUE - Static variable in class org.hkijena.jipipe.extensions.expressions.DefaultExpressionEvaluator
 
containingCollection(Class<? extends JIPipeParameterCollection>) - Static method in class org.hkijena.jipipe.extensions.parameters.library.collections.ParameterCollectionList
Creates an instance from a template collection class.
containingSingle(Class<?>) - Static method in class org.hkijena.jipipe.extensions.parameters.library.collections.ParameterCollectionList
Creates an instance that contains a parameter of a specific value
contains(Object) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTableMetadata
 
containsAll(Collection<?>) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTableMetadata
 
containsColumn(String) - Method in class org.hkijena.jipipe.extensions.parameters.library.table.ParameterTable
 
containsColumn(String) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Returns true if the column exists
containsKey(String) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Returns true if there is a parameter with given key
containsNode(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns true if this graph contains the algorithm
containsNode(JIPipeDataSlot) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
Returns true if the slot is in this graph
containsNode(UUID) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraph
 
containsOnlyRoisOfType(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Returns if this ROI list only contains ROI of given type
ContainsOperator - Class in org.hkijena.jipipe.extensions.expressions.operators
Operator that tests if the left string is contained in the right string
ContainsOperator() - Constructor for class org.hkijena.jipipe.extensions.expressions.operators.ContainsOperator
 
ContainsOperator2 - Class in org.hkijena.jipipe.extensions.expressions.operators
Operator that tests if the left string is contained in the right string
ContainsOperator2() - Constructor for class org.hkijena.jipipe.extensions.expressions.operators.ContainsOperator2
 
ContainsStringPredicateFunction - Class in org.hkijena.jipipe.extensions.expressions.functions
 
ContainsStringPredicateFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.ContainsStringPredicateFunction
 
context() - Method in class org.hkijena.jipipe.ui.components.SplashScreen
 
context() - Method in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
 
context() - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel
 
Contrast(ImageProcessor, int, boolean) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local.ContrastLocalAutoThreshold2DAlgorithm
 
ContrastEnhancerSettings() - Constructor for class org.hkijena.jipipe.extensions.clij2.CLIJSettings.ContrastEnhancerSettings
 
ContrastLocalAutoThreshold2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local
Segmenter node that thresholds via an auto threshold Based on code from Auto_Local_Threshold
ContrastLocalAutoThreshold2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local.ContrastLocalAutoThreshold2DAlgorithm
 
ContrastLocalAutoThreshold2DAlgorithm(ContrastLocalAutoThreshold2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.local.ContrastLocalAutoThreshold2DAlgorithm
Copies the algorithm
CONTROL_STYLE_CHECKBOX - Static variable in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
 
CONTROL_STYLE_LIST - Static variable in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
 
CONTROL_STYLE_PANEL - Static variable in class org.hkijena.jipipe.ui.parameters.JIPipeParameterEditorUI
 
CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
CONTROL_TEXT_COLOR - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
convert(JIPipeData) - Method in interface org.hkijena.jipipe.api.data.JIPipeDataConverter
Converts the supported input type to the output type
convert(Class<? extends JIPipeData>, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataTable
Converts this data table in-place and sets the accepted data type
convert(JIPipeData, Class<T>) - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Converts the input data to the output data type
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.annotation.algorithms.ImplicitResultsTableDataConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.CLIJImageToImagePlusDataConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.clij2.datatypes.ImagePlusDataToCLIJImageDataConverter
 
convert(Object) - Method in class org.hkijena.jipipe.extensions.expressions.functions.convert.ToBooleanFunction
 
convert(Object) - Method in class org.hkijena.jipipe.extensions.expressions.functions.convert.ToIntegerFunction
 
convert(Object) - Method in class org.hkijena.jipipe.extensions.expressions.functions.convert.ToNumber2Function
 
convert(Object) - Method in class org.hkijena.jipipe.extensions.expressions.functions.convert.ToNumberFunction
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.filesystem.algorithms.ImplicitPathTypeConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters.SpotsToRoiConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagej2.converters.ImageJ1ToImageJ2Converter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagej2.converters.ImageJ2ToImageJ1Converter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImagePlusToOMEImageTypeConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImageToLUTTypeConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.ImplicitImageTypeConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.LUTToImageTypeConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToImagePlusTypeConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OmeImageToOMEXMLTypeConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.OMEImageToROITypeConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.algorithms.PlotToImageTypeConverter
 
convert(ImagePlus, ColorSpace, JIPipeProgressInfo) - Method in interface org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.ColorSpace
Converts the image into the current color space
convert(int, ColorSpace) - Method in interface org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.ColorSpace
Converts a single pixel from its source image space into this one
convert(ImagePlus, ColorSpace, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.GreyscaleColorSpace
 
convert(int, ColorSpace) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.GreyscaleColorSpace
 
convert(ImagePlus, ColorSpace, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.HSBColorSpace
 
convert(int, ColorSpace) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.HSBColorSpace
 
convert(ImagePlus, ColorSpace, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.IgnoreColorSpace
 
convert(int, ColorSpace) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.IgnoreColorSpace
 
convert(ImagePlus, ColorSpace, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.LABColorSpace
 
convert(int, ColorSpace) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.LABColorSpace
 
convert(ImagePlus, ColorSpace, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.RGBColorSpace
 
convert(int, ColorSpace) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.RGBColorSpace
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.multiparameters.converters.ParametersDataToResultsTableDataConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.plots.converters.PlotToTableConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.strings.StringDataConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.tables.DoubleArrayColumnToTableConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.tables.StringArrayColumnToTableConverter
 
convert(JIPipeData) - Method in class org.hkijena.jipipe.extensions.utils.datatypes.PathDataToJIPipeOutputConverter
 
convert3ChannelToRGBIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts an ImagePlus to the color space of this data.
ConvertAnnotationTableToAnnotatedTables - Class in org.hkijena.jipipe.extensions.tables.nodes.annotations
Algorithm that integrates columns
ConvertAnnotationTableToAnnotatedTables(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.ConvertAnnotationTableToAnnotatedTables
Creates a new instance
ConvertAnnotationTableToAnnotatedTables(ConvertAnnotationTableToAnnotatedTables) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.annotations.ConvertAnnotationTableToAnnotatedTables
Creates a copy
ConvertColumnsAlgorithm - Class in org.hkijena.jipipe.extensions.tables.nodes.columns
Algorithm that integrates columns
ConvertColumnsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ConvertColumnsAlgorithm
Creates a new instance
ConvertColumnsAlgorithm(ConvertColumnsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.columns.ConvertColumnsAlgorithm
Creates a copy
ConvertDataToOutputPath - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
ConvertDataToOutputPath(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConvertDataToOutputPath
 
ConvertDataToOutputPath(ConvertDataToOutputPath) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.ConvertDataToOutputPath
Copies the algorithm
convertDisplayOperationsToImportOperations() - Method in class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry
Converts all registered JIPipeDataDisplayOperation entries into JIPipeDataImportOperation
ConverterAlgorithm - Class in org.hkijena.jipipe.extensions.utils.algorithms
Algorithm that converts any type to any other type
ConverterAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm
 
ConverterAlgorithm(JIPipeSimpleIteratingAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.ConverterAlgorithm
 
ConverterWrapperImageSource - Class in org.hkijena.jipipe.extensions.imagejdatatypes.util
 
ConverterWrapperImageSource(ImageSource, Function<ImagePlus, ImagePlus>) - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.util.ConverterWrapperImageSource
 
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorHSBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorLABData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.color.ImagePlusColorRGBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorHSBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorLABData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.color.ImagePlus2DColorRGBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale16UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale32FData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscale8UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.greyscale.ImagePlus2DGreyscaleMaskData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d2.ImagePlus2DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorHSBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorLABData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.color.ImagePlus3DColorRGBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale16UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale32FData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscale8UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.greyscale.ImagePlus3DGreyscaleMaskData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d3.ImagePlus3DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorHSBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorLABData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.color.ImagePlus4DColorRGBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale16UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale32FData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscale8UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.greyscale.ImagePlus4DGreyscaleMaskData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d4.ImagePlus4DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorHSBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorLABData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.color.ImagePlus5DColorRGBData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale16UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale32FData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscale8UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.greyscale.ImagePlus5DGreyscaleMaskData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.d5.ImagePlus5DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT2DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT3DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT4DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFT5DData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.fft.ImagePlusFFTData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale16UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale32FData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscale8UData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.greyscale.ImagePlusGreyscaleMaskData
Converts the incoming image data into the current format.
convertFrom(ImagePlusData) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ImagePlusData
Converts the incoming image data into the current format.
convertFromJIPipeToModule(IntegerList) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.ByteArrayParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(DoubleList) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.DoubleArrayParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(DoubleList) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.FloatArrayParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(IntegerList) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.IntegerArrayParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(LongList) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.LongArrayParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(IntegerList) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.ShortArrayParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(StringList) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.StringArrayParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(JIPipeType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.ParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Boolean) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.BooleanParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Byte) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.ByteParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Double) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.DoubleParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Float) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.FloatParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Integer) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.IntegerParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Long) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.LongParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Short) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.ShortParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(String) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.StringParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(Double) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.RealTypeParameterImageJ2ModuleInput
 
convertFromJIPipeToModule(JIPipeType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.ParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Boolean) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.BooleanParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Byte) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.ByteParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Double) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.DoubleParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Float) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.FloatParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Integer) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.IntegerParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Long) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.LongParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Short) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.ShortParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(String) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.StringParameterImageJ2ModuleOutput
 
convertFromJIPipeToModule(Double) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.RealTypeParameterImageJ2ModuleOutput
 
convertFromModuleToJIPipe(byte[]) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.ByteArrayParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(double[]) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.DoubleArrayParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(float[]) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.FloatArrayParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(int[]) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.IntegerArrayParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(long[]) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.LongArrayParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(short[]) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.ShortArrayParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(String[]) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.arrays.StringArrayParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(ModuleType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.ParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(Boolean) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.BooleanParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(Byte) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.ByteParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(Double) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.DoubleParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(Float) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.FloatParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(Integer) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.IntegerParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(Long) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.LongParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(Short) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.ShortParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(String) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.primitives.StringParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(RealType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.input.RealTypeParameterImageJ2ModuleInput
 
convertFromModuleToJIPipe(ModuleType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.ParameterImageJ2ModuleOutput
 
convertFromModuleToJIPipe(Boolean) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.BooleanParameterImageJ2ModuleOutput
 
convertFromModuleToJIPipe(Byte) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.ByteParameterImageJ2ModuleOutput
 
convertFromModuleToJIPipe(Double) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.DoubleParameterImageJ2ModuleOutput
 
convertFromModuleToJIPipe(Float) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.FloatParameterImageJ2ModuleOutput
 
convertFromModuleToJIPipe(Integer) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.IntegerParameterImageJ2ModuleOutput
 
convertFromModuleToJIPipe(Long) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.LongParameterImageJ2ModuleOutput
 
convertFromModuleToJIPipe(Short) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.ShortParameterImageJ2ModuleOutput
 
convertFromModuleToJIPipe(String) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.primitives.StringParameterImageJ2ModuleOutput
 
convertFromModuleToJIPipe(RealType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.parameters.output.RealTypeParameterImageJ2ModuleOutput
 
convertGlobToRegex(String) - Static method in class org.hkijena.jipipe.utils.StringUtils
Converts a standard POSIX Shell globbing pattern into a regular expression pattern.
convertHSBToRGB(ImagePlus, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts an HSB image to RGB (re-using the same components)
ConvertImageAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert
 
ConvertImageAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert.ConvertImageAlgorithm
 
ConvertImageAlgorithm(ConvertImageAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert.ConvertImageAlgorithm
 
ConvertImageTo16BitAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert
 
ConvertImageTo16BitAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert.ConvertImageTo16BitAlgorithm
 
ConvertImageTo16BitAlgorithm(ConvertImageTo16BitAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert.ConvertImageTo16BitAlgorithm
 
ConvertImageTo32BitAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert
 
ConvertImageTo32BitAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert.ConvertImageTo32BitAlgorithm
 
ConvertImageTo32BitAlgorithm(ConvertImageTo32BitAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert.ConvertImageTo32BitAlgorithm
 
ConvertImageTo8BitAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert
 
ConvertImageTo8BitAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert.ConvertImageTo8BitAlgorithm
 
ConvertImageTo8BitAlgorithm(ConvertImageTo8BitAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert.ConvertImageTo8BitAlgorithm
 
ConvertImageToHSBAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert
 
ConvertImageToHSBAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert.ConvertImageToHSBAlgorithm
 
ConvertImageToHSBAlgorithm(ConvertImageToHSBAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert.ConvertImageToHSBAlgorithm
 
ConvertImageToLABAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert
 
ConvertImageToLABAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert.ConvertImageToLABAlgorithm
 
ConvertImageToLABAlgorithm(ConvertImageToLABAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convert.ConvertImageToLABAlgorithm
 
ConvertingColumnOperation - Interface in org.hkijena.jipipe.extensions.tables
A column operation that returns an output that has the same size as the input
ConvertingTableColumnProcessorParameter - Class in org.hkijena.jipipe.extensions.tables.parameters.processors
A parameter that models processing an input column via an conversion function and generating an output column
ConvertingTableColumnProcessorParameter() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter
 
ConvertingTableColumnProcessorParameter(ConvertingTableColumnProcessorParameter) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.processors.ConvertingTableColumnProcessorParameter
 
ConvertingTableColumnProcessorParameterList - Class in org.hkijena.jipipe.extensions.tables.parameters.collections
 
ConvertingTableColumnProcessorParameterList() - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ConvertingTableColumnProcessorParameterList
Creates a new instance
ConvertingTableColumnProcessorParameterList(ConvertingTableColumnProcessorParameterList) - Constructor for class org.hkijena.jipipe.extensions.tables.parameters.collections.ConvertingTableColumnProcessorParameterList
Creates a copy
convertJIPipeToModuleData(ImageJ2DatasetData) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.DatasetImageJ2ModuleInput
 
convertJIPipeToModuleData(JIPipeDataType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.DataSlotModuleInput
 
convertJIPipeToModuleData(ImagePlusData) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.ImagePlusImageJ2ModuleInput
 
convertJIPipeToModuleData(ImageJ2DatasetData) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.IntervalImageJ2ModuleInput
 
convertJIPipeToModuleData(ImageJ2DatasetData) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.IterableImageJ2ModuleInput
 
convertJIPipeToModuleData(ImageJ2OutOfBoundsFactoryData) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.OutOfBoundsFactoryImageJ2ModuleInput
 
convertJIPipeToModuleData(ImageJ2DatasetData) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.RandomAccessibleImageJ2ModuleInput
 
convertJIPipeToModuleData(ImageJ2ShapeData) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.ShapeImageJ2ModuleInput
 
convertJIPipeToModuleData(ImageJ2DatasetData) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.output.DatasetImageJ2ModuleOutput
 
convertJIPipeToModuleData(JIPipeDataType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.output.DataSlotModuleOutput
 
convertJIPipeToModuleData(ImagePlusData) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.output.ImagePlusImageJ2ModuleOutput
 
convertJIPipeToModuleData(ImageJ2DatasetData) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.output.IntervalImageJ2ModuleOutput
 
convertJIPipeToModuleData(ImageJ2DatasetData) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.output.RandomAccessibleImageJ2ModuleOutput
 
convertLABToRGB(ImagePlus, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts an LAB image to RGB L is stored unsigned (0-255) A is stored signed (-128-127) B is stored signed (-128-127)
convertMergingToSingleDataBatches(List<JIPipeMergingDataBatch>) - Static method in class org.hkijena.jipipe.api.nodes.JIPipeMergingDataBatchBuilder
Builds a single data batch where each slot only can have one row
convertModuleToJIPipeData(Dataset) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.DatasetImageJ2ModuleInput
 
convertModuleToJIPipeData(ModuleDataType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.DataSlotModuleInput
 
convertModuleToJIPipeData(ImagePlus) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.ImagePlusImageJ2ModuleInput
 
convertModuleToJIPipeData(Interval) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.IntervalImageJ2ModuleInput
 
convertModuleToJIPipeData(Iterable) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.IterableImageJ2ModuleInput
 
convertModuleToJIPipeData(OutOfBoundsFactory) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.OutOfBoundsFactoryImageJ2ModuleInput
 
convertModuleToJIPipeData(RandomAccessible) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.RandomAccessibleImageJ2ModuleInput
 
convertModuleToJIPipeData(Shape) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.input.ShapeImageJ2ModuleInput
 
convertModuleToJIPipeData(Dataset) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.output.DatasetImageJ2ModuleOutput
 
convertModuleToJIPipeData(ModuleDataType) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.output.DataSlotModuleOutput
 
convertModuleToJIPipeData(ImagePlus) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.output.ImagePlusImageJ2ModuleOutput
 
convertModuleToJIPipeData(Interval) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.output.IntervalImageJ2ModuleOutput
 
convertModuleToJIPipeData(RandomAccessible) - Method in class org.hkijena.jipipe.extensions.imagej2.io.data.output.RandomAccessibleImageJ2ModuleOutput
 
ConvertParametersToTableAlgorithm - Class in org.hkijena.jipipe.extensions.multiparameters.nodes
 
ConvertParametersToTableAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.nodes.ConvertParametersToTableAlgorithm
 
ConvertParametersToTableAlgorithm(ConvertParametersToTableAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.multiparameters.nodes.ConvertParametersToTableAlgorithm
 
convertPathsToAbsolute() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource
 
convertPathsToAbsolute() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource
 
convertPathsToAbsolute() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource
 
convertPathsToRelative() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FileListDataSource
 
convertPathsToRelative() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.FolderListDataSource
 
convertPathsToRelative() - Method in class org.hkijena.jipipe.extensions.filesystem.datasources.PathListDataSource
 
convertRGBToHSB(ImagePlus, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts an RGB image to HSB (re-using the same components)
convertRGBToLAB(ImagePlus, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts an RGB image to LAB L is stored unsigned (0-255) A is stored signed (-128-127) B is stored signed (-128-127)
ConvertSpotsToRoiNode - Class in org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters
 
ConvertSpotsToRoiNode(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters.ConvertSpotsToRoiNode
 
ConvertSpotsToRoiNode(ConvertSpotsToRoiNode) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters.ConvertSpotsToRoiNode
 
convertTo(String) - Method in class org.hkijena.jipipe.extensions.parameters.library.quantities.Quantity
 
ConvertToAnnotationTable - Class in org.hkijena.jipipe.extensions.annotation.algorithms
Removes a specified annotation
ConvertToAnnotationTable(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable
 
ConvertToAnnotationTable(ConvertToAnnotationTable) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.ConvertToAnnotationTable
Copies the algorithm
convertToBitDepthIfNeeded(ImagePlus, int) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
convertToColorHSBIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts an ImagePlus to the color space of this data.
convertToColorLABIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts an ImagePlus to the color space of this data.
convertToColorRGBIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts an ImagePlus to the color space of this data.
convertToConsensusBitDepthIfNeeded(Collection<ImagePlus>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
convertToGrayscale16UIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts an ImagePlus to the color space of this data.
convertToGrayscale32FIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts an ImagePlus to the color space of this data.
convertToGreyscale8UIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts an ImagePlus to the color space of this data.
convertToGreyscaleIfNeeded(ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts an ImagePlus to the color space of this data.
convertToNumericColumn(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Converts the column into a numeric column.
convertToRGB(ImagePlus, JIPipeProgressInfo) - Method in interface org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.ColorSpace
Converts the color image into RGB (in-place)
convertToRGB(int) - Method in interface org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.ColorSpace
Converts a single pixel from its source image space into RGB
convertToRGB(ImagePlus, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.GreyscaleColorSpace
 
convertToRGB(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.GreyscaleColorSpace
 
convertToRGB(ImagePlus, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.HSBColorSpace
 
convertToRGB(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.HSBColorSpace
 
convertToRGB(ImagePlus, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.IgnoreColorSpace
 
convertToRGB(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.IgnoreColorSpace
 
convertToRGB(ImagePlus, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.LABColorSpace
 
convertToRGB(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.LABColorSpace
 
convertToRGB(ImagePlus, JIPipeProgressInfo) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.RGBColorSpace
 
convertToRGB(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.colorspace.RGBColorSpace
 
convertToSameTypeIfNeeded(ImagePlus, ImagePlus, boolean) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Converts this image to the same type as the other one if needed
convertToStringColumn(int) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Converts the column into a string column.
ConvertTracksToRoiNode - Class in org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters
 
ConvertTracksToRoiNode(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters.ConvertTracksToRoiNode
 
ConvertTracksToRoiNode(ConvertTracksToRoiNode) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.nodes.converters.ConvertTracksToRoiNode
 
ConvexifyAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary
 
ConvexifyAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.ConvexifyAlgorithm
Instantiates a new node type.
ConvexifyAlgorithm(ConvexifyAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.binary.ConvexifyAlgorithm
Instantiates a new node type.
ConvolveByImage2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve
Wrapper around Convolver
ConvolveByImage2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByImage2DAlgorithm
Instantiates a new node type.
ConvolveByImage2DAlgorithm(ConvolveByImage2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByImage2DAlgorithm
Creates a copy
ConvolveByParameter2DAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve
Wrapper around Convolver
ConvolveByParameter2DAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm
Instantiates a new node type.
ConvolveByParameter2DAlgorithm(ConvolveByParameter2DAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.convolve.ConvolveByParameter2DAlgorithm
Creates a copy
convolveSlice(Convolver, int, int, float[], ImageProcessor) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
copyBetweenImages(ImagePlus, ImagePlus, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Copies all data from the source to the target image
copyBufferedImage(BufferedImage) - Static method in class org.hkijena.jipipe.utils.BufferedImageUtils
copyBufferedImageToARGB(BufferedImage) - Static method in class org.hkijena.jipipe.utils.BufferedImageUtils
copyColumnSchemaFrom(ResultsTableData) - Method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Adds missing columns from the other table
CopyContainingFolderDataImportOperation - Class in org.hkijena.jipipe.extensions.core.data
Import operation that copies the containing folder path into the clipboard.
CopyContainingFolderDataImportOperation() - Constructor for class org.hkijena.jipipe.extensions.core.data.CopyContainingFolderDataImportOperation
 
copyCurrentSliceToClipboard() - Method in class org.hkijena.jipipe.extensions.imageviewer.ImageViewerPanel
 
copyFrom(JIPipeNodeTemplate) - Method in class org.hkijena.jipipe.api.JIPipeNodeTemplate
Copies the properties to another node template
copyFrom(SpotDrawer) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.utils.SpotDrawer
 
copyFrom(TrackDrawer) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.utils.TrackDrawer
 
copyFrom(RoiDrawer) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.RoiDrawer
 
copyFrom(JIPipeDataByMetadataExporter) - Method in class org.hkijena.jipipe.extensions.settings.DataExporterSettings
Copies parameters into the settings storage
copyHyperstackDimensions(ImagePlus, ImagePlus) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Copies the hyperstack dimensions from one image to another src and target must have the same number of slices!
copyImage(BufferedImage) - Method in class org.hkijena.jipipe.utils.ui.CopyImageToClipboard
 
CopyImageToClipboard - Class in org.hkijena.jipipe.utils.ui
 
CopyImageToClipboard() - Constructor for class org.hkijena.jipipe.utils.ui.CopyImageToClipboard
 
copyMetadata(JIPipeDataSlotInfo) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
Copies additional parameters such as custom names from the other slot
CopyNFunction - Class in org.hkijena.jipipe.extensions.expressions.functions
 
CopyNFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.CopyNFunction
 
copyOrLink(Path, Path, JIPipeProgressInfo) - Static method in class org.hkijena.jipipe.utils.PathUtils
 
CopyPath - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
CopyPath(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath
 
CopyPath(CopyPath) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CopyPath
Copies the algorithm
CopyPathDataOperation - Class in org.hkijena.jipipe.extensions.filesystem.resultanalysis
 
CopyPathDataOperation() - Constructor for class org.hkijena.jipipe.extensions.filesystem.resultanalysis.CopyPathDataOperation
 
copySlotConfiguration(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.nodes.JIPipeGraphNode
Copies the slot configuration from the other algorithm to this algorithm Override this method for special configuration cases
copyTo(ImageJExportParameters) - Method in class org.hkijena.jipipe.api.compat.ImageJExportParameters
 
copyTo(ImageJImportParameters) - Method in class org.hkijena.jipipe.api.compat.ImageJImportParameters
 
copyTo(JIPipeDynamicParameterCollection) - Method in class org.hkijena.jipipe.api.parameters.JIPipeDynamicParameterCollection
Copies the parameter configuration into the target
copyToClipboard(String) - Static method in class org.hkijena.jipipe.utils.UIUtils
Copies the string to the clipboard
CoreExtension - Class in org.hkijena.jipipe.extensions.core
The core extension
CoreExtension() - Constructor for class org.hkijena.jipipe.extensions.core.CoreExtension
 
CoreImageJUtils - Class in org.hkijena.jipipe.utils
 
CoreImageJUtils() - Constructor for class org.hkijena.jipipe.utils.CoreImageJUtils
 
CosineColumnOperation - Class in org.hkijena.jipipe.extensions.tables.operations.converting
Applies a sine function
CosineColumnOperation() - Constructor for class org.hkijena.jipipe.extensions.tables.operations.converting.CosineColumnOperation
 
CounterVariableSource() - Constructor for class org.hkijena.jipipe.extensions.tables.nodes.rows.AddMissingRowsInSeriesAlgorithm.CounterVariableSource
 
CountROIAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure
 
CountROIAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure.CountROIAlgorithm
 
CountROIAlgorithm(CountROIAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.measure.CountROIAlgorithm
 
countRoisOfType(int) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Counts all ROIs of given type
createAddSlotButton(JIPipeSlotType) - Method in class org.hkijena.jipipe.ui.grapheditor.general.nodeui.JIPipeNodeUI
Function that creates the "Add slot" button
createAnnotation(String) - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.optional.OptionalAnnotationNameParameter
Creates a new annotation with the defined name and value
createAnnotation(String[]) - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.optional.OptionalAnnotationNameParameter
Creates a new annotation with the defined name and value
createAnnotation(Collection<String>) - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.optional.OptionalAnnotationNameParameter
Creates a new annotation with the defined name and value
createAnnotation(JIPipeData) - Method in class org.hkijena.jipipe.extensions.parameters.library.primitives.optional.OptionalDataAnnotationNameParameter
Creates a new annotation with the defined name and value
CreateArrayFunction - Class in org.hkijena.jipipe.extensions.expressions.functions.collections
 
CreateArrayFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.collections.CreateArrayFunction
 
createAuthorPanel(Component, Collection<JIPipeAuthorMetadata>, Icon) - Static method in class org.hkijena.jipipe.ui.extensions.ExtensionInfoPanel
 
createAuthorPanel(Component, JIPipeAuthorMetadata.List, Icon, String) - Static method in class org.hkijena.jipipe.ui.extensions.ExtensionItemPanel
 
createCondaEnvironment(SelectCondaEnvPythonInstaller.Configuration) - Static method in class org.hkijena.jipipe.extensions.python.installers.SelectCondaEnvPythonInstaller
 
createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.api.collections.ListParameter.Deserializer
 
createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.api.functions.FunctionParameter.Deserializer
 
createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.api.matrix.Matrix2D.Deserializer
 
createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.api.optional.OptionalParameter.Deserializer
 
createContextual(DeserializationContext, BeanProperty) - Method in class org.hkijena.jipipe.extensions.parameters.api.pairs.PairParameter.Deserializer
 
createData(Class<T>, Object...) - Static method in class org.hkijena.jipipe.JIPipe
Instantiates a data class with the provided parameters This method is helpful if output data is constructed based on slot types
createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.BoxAndWhiskerCategoryPlotData
 
createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.CategoryPlotData
Creates a data set from the current series
createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PiePlotData
Creates a data set from the current series
createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.StatisticalCategoryPlotData
 
createDataSet() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.XYPlotData
Creates a data set from the current series
createDecreaseButton(int) - Method in class org.hkijena.jipipe.ui.theme.ArrowLessScrollBarUI
 
createDesktopImage() - Static method in class org.hkijena.jipipe.utils.ui.ScreenImage
Convenience method to create a BufferedImage of the desktop
createDialog(Component) - Method in class org.hkijena.jipipe.ui.components.AdvancedFileChooser
 
CreateDirectory - Class in org.hkijena.jipipe.extensions.filesystem.algorithms
Applies subfolder navigation to each input folder
CreateDirectory(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory
 
CreateDirectory(CreateDirectory) - Constructor for class org.hkijena.jipipe.extensions.filesystem.algorithms.CreateDirectory
Copies the algorithm
createDisplaySettings(SpotsCollectionData) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.utils.SpotDrawer
 
createDisplaySettings(TrackCollectionData) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.utils.TrackDrawer
 
createDocumentation(String, String) - Static method in class org.hkijena.jipipe.utils.DocumentationUtils
 
createDocumentation(String, String, Class<?>) - Static method in class org.hkijena.jipipe.utils.DocumentationUtils
 
createDummyImage() - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Creates a 2D 8-bit image that covers the region of all ROI
createDummyImageFor(Collection<ROIListData>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Creates a 2D 8-bit black image that covers the region of all provided ROI
createEditorFor(JIPipeWorkbench, JIPipeParameterAccess) - Method in class org.hkijena.jipipe.api.registries.JIPipeParameterTypeRegistry
Creates editor for the parameter
createEntryPropertiesComponent(Component, Component, int, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.components.FormPanel
 
createEntryPropertiesComponent(Component, Component, int, MarkdownDocument) - Method in class org.hkijena.jipipe.ui.parameters.ParameterPanel
 
createEnvironment() - Method in class org.hkijena.jipipe.extensions.python.JIPipePythonAdapterLibraryEnvironmentInstaller
 
createEnvironment() - Method in class org.hkijena.jipipe.extensions.python.PythonPackageLibraryEnvironmentInstaller
 
createExporter(JIPipeProjectWorkbench, NodeGroup, String, HTMLText) - Static method in class org.hkijena.jipipe.ui.extensionbuilder.JIPipeJsonExporter
Creates a new exporter tab
createFactory() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.BorderImageJ2OutOfBoundsFactoryData
 
createFactory() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant.ByteConstantValueImageJ2OutOfBoundsFactoryData
 
createFactory() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant.DoubleConstantValueImageJ2OutOfBoundsFactoryData
 
createFactory() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant.FloatConstantValueImageJ2OutOfBoundsFactoryData
 
createFactory() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant.IntegerConstantValueImageJ2OutOfBoundsFactoryData
 
createFactory() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant.LongConstantValueImageJ2OutOfBoundsFactoryData
 
createFactory() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.constant.ShortConstantValueImageJ2OutOfBoundsFactoryData
 
createFactory() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.EmptyImageJ2OutOfBoundsFactory
 
createFactory() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.ImageJ2OutOfBoundsFactoryData
 
createFactory() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.MirrorImageJ2OutOfBoundsFactoryData
 
createFactory() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.outofbounds.PeriodicImageJ2OutOfBoundsFactoryData
 
createGradientLUT(Color, Color) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.lut.SetLUTFromColorsAlgorithm
 
CreateHSBColorFunction - Class in org.hkijena.jipipe.extensions.expressions.functions.color
 
CreateHSBColorFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.color.CreateHSBColorFunction
 
createIconTextHTMLTable(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils
Creates an HTML table with an icon and text.
createIconTextHTMLTableElement(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils
Creates an HTML table with an icon and text.
CreateIJ2OutOfBoundsFactoryAlgorithm - Class in org.hkijena.jipipe.extensions.imagej2.algorithms
 
CreateIJ2OutOfBoundsFactoryAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagej2.algorithms.CreateIJ2OutOfBoundsFactoryAlgorithm
 
CreateIJ2OutOfBoundsFactoryAlgorithm(CreateIJ2OutOfBoundsFactoryAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagej2.algorithms.CreateIJ2OutOfBoundsFactoryAlgorithm
 
CreateIJ2ShapeAlgorithm - Class in org.hkijena.jipipe.extensions.imagej2.algorithms
 
CreateIJ2ShapeAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagej2.algorithms.CreateIJ2ShapeAlgorithm
 
CreateIJ2ShapeAlgorithm(CreateIJ2ShapeAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagej2.algorithms.CreateIJ2ShapeAlgorithm
 
createImage(JComponent) - Static method in class org.hkijena.jipipe.utils.ui.ScreenImage
Create a BufferedImage for Swing components.
createImage(JComponent, Rectangle) - Static method in class org.hkijena.jipipe.utils.ui.ScreenImage
Create a BufferedImage for Swing components.
createImage(Component) - Static method in class org.hkijena.jipipe.utils.ui.ScreenImage
Create a BufferedImage for AWT components.
createImage(Rectangle) - Static method in class org.hkijena.jipipe.utils.ui.ScreenImage
Create a BufferedImage from a rectangular region on the screen.
createImage(JComponent) - Static method in class org.hkijena.jipipe.utils.ui.ScreenImageSVG
Create a BufferedImage for Swing components.
createImage(JComponent, Rectangle) - Static method in class org.hkijena.jipipe.utils.ui.ScreenImageSVG
Create a BufferedImage for Swing components.
createIncreaseButton(int) - Method in class org.hkijena.jipipe.ui.theme.ArrowLessScrollBarUI
 
createInfoLabel(String, String) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
createInstance(JIPipeGraphNode) - Method in class org.hkijena.jipipe.api.data.JIPipeDataSlotInfo
 
createInstance(Context) - Static method in class org.hkijena.jipipe.JIPipe
Helper to create JIPipe from a context.
createJLabel(String, Icon) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
createJLabel(String, int) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
createJLabel(String, Icon, int) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
CreateLABColorFunction - Class in org.hkijena.jipipe.extensions.expressions.functions.color
 
CreateLABColorFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.color.CreateLABColorFunction
 
createLabel(Roi, int) - Method in enum org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.RoiLabel
Generates a string label based on the ROI
CreateLaunchersTool - Class in org.hkijena.jipipe.extensions.tools
 
CreateLaunchersTool(JIPipeWorkbench) - Constructor for class org.hkijena.jipipe.extensions.tools.CreateLaunchersTool
Creates a new instance
createLayoutManager() - Method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
createLUTFromGradient(List<ColorUtils.GradientStop>) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
 
CreateMapFunction - Class in org.hkijena.jipipe.extensions.expressions.functions.collections
 
CreateMapFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.collections.CreateMapFunction
 
createMenuItem(String, String, Icon, Runnable) - Static method in class org.hkijena.jipipe.utils.UIUtils
 
createMenuTree(JMenu, Set<String>) - Static method in class org.hkijena.jipipe.utils.UIUtils
Creates a hierarchy of menus based on the menu paths vector
createMissingPythonNotificationIfNeeded(JIPipeNotificationInbox) - Static method in class org.hkijena.jipipe.extensions.cellpose.CellposeExtension
 
createMissingPythonNotificationIfNeeded(JIPipeNotificationInbox) - Static method in class org.hkijena.jipipe.extensions.omnipose.OmniposeExtension
 
createMissingPythonNotificationIfNeeded(JIPipeNotificationInbox) - Static method in class org.hkijena.jipipe.extensions.python.PythonExtension
 
createMissingRNotificationIfNeeded(JIPipeNotificationInbox) - Static method in class org.hkijena.jipipe.extensions.r.RExtension
 
createNewEntry() - Method in class org.hkijena.jipipe.extensions.parameters.api.matrix.Matrix2D
Creates a new entry
createNewEntry() - Method in class org.hkijena.jipipe.extensions.parameters.library.matrix.Matrix2DFloat
 
createNextButton() - Method in class org.hkijena.jipipe.ui.theme.ModernSpinnerUI
 
createNode(String) - Static method in class org.hkijena.jipipe.JIPipe
Creates a new node instance from its id
createNode(Class<T>) - Static method in class org.hkijena.jipipe.JIPipe
Creates a new node instance from its class.
createOldLibJIPipePythonNotificationIfNeeded(JIPipeNotificationInbox) - Static method in class org.hkijena.jipipe.extensions.python.PythonExtension
 
createOptionsButton() - Method in class org.hkijena.jipipe.ui.data.VirtualDataControl
 
CreatePairArrayFunction - Class in org.hkijena.jipipe.extensions.expressions.functions.collections
 
CreatePairArrayFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.collections.CreatePairArrayFunction
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.spots.SpotsManagerPlugin
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.ijtrackmate.display.tracks.TracksManagerPlugin
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.AnimationSpeedPlugin
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.AnnotationInfoPlugin
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.CalibrationPlugin
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.ImageViewerPanelPlugin
Called when the form panel should be recreated
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.LUTManagerPlugin
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.maskdrawer.EllipseMaskDrawerTool
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.maskdrawer.MaskDrawerPlugin
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.maskdrawer.MaskToROIDrawerPlugin
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.maskdrawer.MeasurementDrawerPlugin
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.maskdrawer.PencilMaskDrawerTool
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.maskdrawer.PolygonMaskDrawerTool
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.maskdrawer.RectangleMaskDrawerTool
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.PixelInfoPlugin
 
createPalettePanel(FormPanel) - Method in class org.hkijena.jipipe.extensions.imageviewer.plugins.roimanager.ROIManagerPlugin
 
createParameters() - Static method in class org.hkijena.jipipe.extensions.expressions.DefaultExpressionEvaluator
 
createPreviousButton() - Method in class org.hkijena.jipipe.ui.theme.ModernSpinnerUI
 
CreateRGBColorFunction - Class in org.hkijena.jipipe.extensions.expressions.functions.color
 
CreateRGBColorFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.color.CreateRGBColorFunction
 
createRightIconTextHTMLTable(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils
Same as createIconTextHTMLTable but the icon is on the right side
createRightIconTextHTMLTableElement(String, URL) - Static method in class org.hkijena.jipipe.utils.StringUtils
Same as createIconTextHTMLTableElement but the icon is on the right side
createScaleBarOverlay() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.calibration.ScaleBarGenerator
Create and draw the scalebar using an Overlay.
createScreenshotClipboard() - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphEditorUI
 
createScreenshotPNG() - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
Creates a screenshot of the whole graph compartment
createScreenshotSVG() - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
Creates a screenshot of the whole graph compartment
createSeriesTable() - Method in class org.hkijena.jipipe.extensions.plots.datatypes.PlotData
Generates an empty series table with the correct columns
createShape() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.CenteredRectangleImageJ2ShapeData
 
createShape() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.DiamondImageJ2ShapeData
 
createShape() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.DiamondTipsImageJ2ShapeData
 
createShape() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.EmptyImageJ2ShapeData
 
createShape() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.HorizontalLineImageJ2ShapeData
 
createShape() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.HyperSphereImageJ2ShapeData
 
createShape() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.ImageJ2ShapeData
 
createShape() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.PairOfPointsImageJ2ShapeData
 
createShape() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.PeriodicLineImageJ2ShapeData
 
createShape() - Method in class org.hkijena.jipipe.extensions.imagej2.datatypes.shapes.RectangleImageJ2ShapeData
 
createSingletonSlot(JIPipeData, JIPipeGraphNode) - Static method in class org.hkijena.jipipe.api.data.JIPipeDataSlot
Creates a new input slot that contains only one data item
CreateSpotDetectorNode - Class in org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors
 
CreateSpotDetectorNode(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors.CreateSpotDetectorNode
 
CreateSpotDetectorNode(CreateSpotDetectorNode) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors.CreateSpotDetectorNode
 
CreateSpotDetectorNodeInfo - Class in org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors
 
CreateSpotDetectorNodeInfo(SpotDetectorFactory<?>) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors.CreateSpotDetectorNodeInfo
 
CreateSpotTrackerNode - Class in org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors
 
CreateSpotTrackerNode(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors.CreateSpotTrackerNode
 
CreateSpotTrackerNode(CreateSpotTrackerNode) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors.CreateSpotTrackerNode
 
CreateSpotTrackerNodeInfo - Class in org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors
 
CreateSpotTrackerNodeInfo(SpotTrackerFactory) - Constructor for class org.hkijena.jipipe.extensions.ijtrackmate.nodes.detectors.CreateSpotTrackerNodeInfo
 
CreateStackAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions
Wrapper around ImageProcessor
CreateStackAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.CreateStackAlgorithm
Instantiates a new node type.
CreateStackAlgorithm(CreateStackAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.dimensions.CreateStackAlgorithm
Instantiates a new node type.
createStarRatingLabel(String, double, int) - Static method in class org.hkijena.jipipe.utils.UIUtils
Creates a read-only "star-rating" label
createToggleButton() - Method in class org.hkijena.jipipe.ui.running.RealTimeProjectRunner
 
createTrackListener(JSlider) - Method in class org.hkijena.jipipe.ui.theme.ModernSliderUI
 
createTransferable(JComponent) - Method in class org.hkijena.jipipe.extensions.nodetemplate.NodeTemplateBoxTransferHandler
 
createTransferable(JComponent) - Method in class org.hkijena.jipipe.extensions.nodetoolboxtool.NodeToolBoxTransferHandler
 
createUI(JComponent) - Static method in class org.hkijena.jipipe.ui.theme.ArrowLessScrollBarUI
 
createUI(JComponent) - Static method in class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
createUI(JComponent) - Static method in class org.hkijena.jipipe.ui.theme.ModernSliderUI
 
createUI(JComponent) - Static method in class org.hkijena.jipipe.ui.theme.ModernSpinnerUI
 
createUIForExportOperation(JIPipeWorkbench, ImageJDataExportOperation) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
Generates a UI for the importer
createUIForImportOperation(JIPipeWorkbench, ImageJDataImportOperation) - Method in class org.hkijena.jipipe.api.registries.JIPipeImageJAdapterRegistry
Generates a UI for the importer
createUndoSnapshot() - Method in class org.hkijena.jipipe.ui.tableeditor.TableEditor
Creates a new 'Undo' point
createVerticalSeparator() - Static method in class org.hkijena.jipipe.utils.UIUtils
 
createWhiteMask(ImagePlus) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.utils.ImageROITargetArea
 
createWhiteMaskProcessor(ImagePlus) - Static method in enum org.hkijena.jipipe.extensions.imagejalgorithms.utils.ImageROITargetArea
 
createXLSXSheetName(String, Collection<String>) - Static method in class org.hkijena.jipipe.extensions.tables.datatypes.ResultsTableData
Creates a valid XLSX sheet name from a string
createZoomedDummyCanvas(ImagePlus, Rectangle) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Creates a dummy canvas that contains the appropriate magnification settings
createZoomedDummyCanvas(ImagePlus, double) - Static method in class org.hkijena.jipipe.extensions.imagejdatatypes.util.ImageJUtils
Creates a dummy canvas that contains the appropriate magnification settings
crop(JIPipeProgressInfo, ImagePlus, Rectangle) - Static method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.transform.TransformCrop2DAlgorithm
 
crop(boolean, boolean, boolean, boolean) - Method in class org.hkijena.jipipe.extensions.imagejdatatypes.datatypes.ROIListData
Moves the ROI, so the bounding rectangle is at 0,0
crop(boolean) - Method in class org.hkijena.jipipe.ui.grapheditor.general.JIPipeGraphCanvasUI
Sets node positions to make the top left to 0, 0
CropLabelsAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels
 
CropLabelsAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.CropLabelsAlgorithm
 
CropLabelsAlgorithm(CropLabelsAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.labels.CropLabelsAlgorithm
 
CropToRoiAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi
 
CropToRoiAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm
 
CropToRoiAlgorithm(CropToRoiAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.roi.CropToRoiAlgorithm
 
CSS_RULES - Static variable in class org.hkijena.jipipe.ui.components.markdown.MarkdownReader
 
CSS_RULES - Static variable in class org.hkijena.jipipe.ui.components.UserFriendlyErrorUI.EntryUI
 
CSS_RULES_DARK - Static variable in class org.hkijena.jipipe.ui.components.markdown.MarkdownReader
 
CumulativeTransformArrayFunction - Class in org.hkijena.jipipe.extensions.expressions.functions.statistics
 
CumulativeTransformArrayFunction() - Constructor for class org.hkijena.jipipe.extensions.expressions.functions.statistics.CumulativeTransformArrayFunction
 
CURRENT_PROJECT_FORMAT_VERSION - Static variable in class org.hkijena.jipipe.api.JIPipeProject
The current version of the project format.
CurrentStateSnapshot - Class in org.hkijena.jipipe.ui.history
A snapshot that indicates the current state.
CurrentStateSnapshot() - Constructor for class org.hkijena.jipipe.ui.history.CurrentStateSnapshot
 
CustomAutoThreshold2D16UAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Thresholding node that thresholds via an auto threshold
CustomAutoThreshold2D16UAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.CustomAutoThreshold2D16UAlgorithm
 
CustomAutoThreshold2D16UAlgorithm(CustomAutoThreshold2D16UAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.CustomAutoThreshold2D16UAlgorithm
Copies the algorithm
CustomAutoThreshold2D16UAlgorithm.VariableSource - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
 
CustomAutoThreshold2D32FAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Thresholding node that thresholds via an auto threshold
CustomAutoThreshold2D32FAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.CustomAutoThreshold2D32FAlgorithm
 
CustomAutoThreshold2D32FAlgorithm(CustomAutoThreshold2D32FAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.CustomAutoThreshold2D32FAlgorithm
Copies the algorithm
CustomAutoThreshold2D32FAlgorithm.VariableSource - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
 
CustomAutoThreshold2D8UAlgorithm - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
Thresholding node that thresholds via an auto threshold
CustomAutoThreshold2D8UAlgorithm(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.CustomAutoThreshold2D8UAlgorithm
 
CustomAutoThreshold2D8UAlgorithm(CustomAutoThreshold2D8UAlgorithm) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold.CustomAutoThreshold2D8UAlgorithm
Copies the algorithm
CustomAutoThreshold2D8UAlgorithm.VariableSource - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.threshold
 
CustomBoxAndWhiskerRenderer - Class in org.hkijena.jipipe.extensions.plots.datatypes
A box-and-whisker renderer.
CustomBoxAndWhiskerRenderer() - Constructor for class org.hkijena.jipipe.extensions.plots.datatypes.CustomBoxAndWhiskerRenderer
Default constructor.
CustomColoc2<T extends RealType<T> & NativeType<T>> - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization
Customized version of Coloc_2 because many properties are protected
CustomColoc2(JIPipeProgressInfo) - Constructor for class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization.CustomColoc2
 
CustomColoc2.ColocResult<T extends RealType<T> & NativeType<T>> - Class in org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization
 
customColocalise(Img<T>, Img<T>, Coloc_2<T>.BoundingBox, Img<T>, List<ResultHandler<T>>) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.colocalization.CustomColoc2
Call this method to run a whole colocalisation configuration, all selected algorithms get run on the supplied images.
customCopy(FormData, JIPipeIssueReport) - Method in class org.hkijena.jipipe.extensions.forms.datatypes.FormData
A custom copy function that copies the contents from source into this form.
customCopy(FormData, JIPipeIssueReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms.MaskDrawerFormData
 
customCopy(FormData, JIPipeIssueReport) - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms.ROIDrawerFormData
 
CustomDataLoader() - Constructor for class org.hkijena.jipipe.extensions.imagejdatatypes.display.CachedImagePlusDataViewerWindow.CustomDataLoader
 
CustomEditorPane - Class in org.hkijena.jipipe.utils
Version of the EditorPane that allows access to protected methods
CustomEditorPane() - Constructor for class org.hkijena.jipipe.utils.CustomEditorPane
 
CustomExpressionVariablesParameter - Class in org.hkijena.jipipe.extensions.expressions
A parameter collection that allows the creation of custom expression variables Please note that the JIPipeParameter annotation should have JIPipeParameterPersistence set to 'NestedCollection'.
CustomExpressionVariablesParameter() - Constructor for class org.hkijena.jipipe.extensions.expressions.CustomExpressionVariablesParameter
 
CustomExpressionVariablesParameter(JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.extensions.expressions.CustomExpressionVariablesParameter
 
CustomExpressionVariablesParameter(CustomExpressionVariablesParameter) - Constructor for class org.hkijena.jipipe.extensions.expressions.CustomExpressionVariablesParameter
 
CustomExpressionVariablesParameter(CustomExpressionVariablesParameter, JIPipeGraphNode) - Constructor for class org.hkijena.jipipe.extensions.expressions.CustomExpressionVariablesParameter
 
CustomGradientTrackRenderer - Class in org.hkijena.jipipe.extensions.imageviewer
A GradientTrackRenderer that handles the case start=end gracefully
CustomGradientTrackRenderer() - Constructor for class org.hkijena.jipipe.extensions.imageviewer.CustomGradientTrackRenderer
 
customReset() - Method in class org.hkijena.jipipe.extensions.forms.datatypes.FormData
A custom reset method
customReset() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms.MaskDrawerFormData
 
customReset() - Method in class org.hkijena.jipipe.extensions.imagejalgorithms.ij1.forms.ROIDrawerFormData
 
CustomTabbedPaneUI - Class in org.hkijena.jipipe.ui.theme
MetalTabbedPaneUI without the slants
CustomTabbedPaneUI() - Constructor for class org.hkijena.jipipe.ui.theme.CustomTabbedPaneUI
 
CustomTabbedPaneUI.TabbedPaneLayout - Class in org.hkijena.jipipe.ui.theme
This class should be treated as a "protected" inner class.

D

DARK_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
 
DARK_GRAY - Static variable in class org.hkijena.jipipe.ui.theme.ModernMetalTheme
 
DARK_THEME - Static variable in class org.hkijena.jipipe.utils.UIUtils
 
DarkModernMetalTheme - Class in org.hkijena.jipipe.ui.theme
 
DarkModernMetalTheme() - Constructor for class org.hkijena.jipipe.ui.theme.DarkModernMetalTheme
Creates an instance of OceanTheme
DataAnnotationQueryExpression - Class in org.hkijena.jipipe.extensions.expressions
An expression that is used to query annotations
DataAnnotationQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.expressions.DataAnnotationQueryExpression
 
DataAnnotationQueryExpression(String) - Constructor for class org.hkijena.jipipe.extensions.expressions.DataAnnotationQueryExpression
 
DataAnnotationQueryExpression(AbstractExpressionParameter) - Constructor for class org.hkijena.jipipe.extensions.expressions.DataAnnotationQueryExpression
 
DataAnnotationQueryExpressionVariableSource - Class in org.hkijena.jipipe.extensions.expressions
 
DataAnnotationQueryExpressionVariableSource() - Constructor for class org.hkijena.jipipe.extensions.expressions.DataAnnotationQueryExpressionVariableSource
 
DataAnnotationToStringAnnotation - Class in org.hkijena.jipipe.extensions.annotation.algorithms
 
DataAnnotationToStringAnnotation(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.DataAnnotationToStringAnnotation
 
DataAnnotationToStringAnnotation(DataAnnotationToStringAnnotation) - Constructor for class org.hkijena.jipipe.extensions.annotation.algorithms.DataAnnotationToStringAnnotation
 
DataBatchAssistantDataTableUI - Class in org.hkijena.jipipe.ui.batchassistant
UI that displays a JIPipeDataTable that is cached
DataBatchAssistantDataTableUI(JIPipeWorkbench, JIPipeDataTable) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantDataTableUI
 
DataBatchAssistantDataTableUI.WrapperColumnHeaderRenderer - Class in org.hkijena.jipipe.ui.batchassistant
Renders the column header of DataBatchAssistantTableModel
DataBatchAssistantTableModel - Class in org.hkijena.jipipe.ui.batchassistant
Wraps around a JIPipeDataTable to display additional columns.
DataBatchAssistantTableModel(JTable, JIPipeDataTable) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantTableModel
Creates a new instance
DataBatchAssistantUI - Class in org.hkijena.jipipe.ui.batchassistant
A tool that assists the user in configuring batch generation for JIPipeIteratingAlgorithm and JIPipeMergingAlgorithm
DataBatchAssistantUI(JIPipeProjectWorkbench, JIPipeGraphNode, Runnable) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataBatchAssistantUI
 
DataBatchBrowserUI - Class in org.hkijena.jipipe.ui.batchassistant
Browser for a Data batch, similar to the cache browser
DataBatchBrowserUI(JIPipeWorkbench, JIPipeMergingDataBatch) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataBatchBrowserUI
 
DataBatchGenerationSettings() - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterlessSimpleIteratingAlgorithm.DataBatchGenerationSettings
 
DataBatchGenerationSettings(JIPipeParameterlessSimpleIteratingAlgorithm.DataBatchGenerationSettings) - Constructor for class org.hkijena.jipipe.api.nodes.JIPipeParameterlessSimpleIteratingAlgorithm.DataBatchGenerationSettings
 
DataBatchSlicer - Class in org.hkijena.jipipe.extensions.utils.algorithms
 
DataBatchSlicer(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.DataBatchSlicer
 
DataBatchSlicer(DataBatchSlicer) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.DataBatchSlicer
 
DataBatchStatus - Enum in org.hkijena.jipipe.extensions.forms.ui
 
DataBatchStatusData - Class in org.hkijena.jipipe.extensions.batchassistant
 
DataBatchStatusData() - Constructor for class org.hkijena.jipipe.extensions.batchassistant.DataBatchStatusData
 
DataBatchStatusData(DataBatchStatusData) - Constructor for class org.hkijena.jipipe.extensions.batchassistant.DataBatchStatusData
 
DataBatchStatusTableCellRenderer - Class in org.hkijena.jipipe.extensions.forms.ui
 
DataBatchStatusTableCellRenderer(List<DataBatchStatus>) - Constructor for class org.hkijena.jipipe.extensions.forms.ui.DataBatchStatusTableCellRenderer
 
DataBatchTree - Class in org.hkijena.jipipe.ui.batchassistant
Displays a tree that contains data stored in a data batch
DataBatchTree(JIPipeWorkbench, JIPipeMergingDataBatch) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataBatchTree
 
DataBatchUI - Class in org.hkijena.jipipe.ui.batchassistant
 
DataBatchUI(JIPipeProjectWorkbench, JIPipeGraphNode, JIPipeMergingDataBatch) - Constructor for class org.hkijena.jipipe.ui.batchassistant.DataBatchUI
 
DataConverterEdge() - Constructor for class org.hkijena.jipipe.api.registries.JIPipeDatatypeRegistry.DataConverterEdge
 
DataExporterSettings - Class in org.hkijena.jipipe.extensions.settings
Settings for default data exporters
DataExporterSettings() - Constructor for class org.hkijena.jipipe.extensions.settings.DataExporterSettings
 
dataInfos - Variable in class org.hkijena.jipipe.ui.documentation.JIPipeDataTypeCompendiumUI
 
DataPreviewControlUI - Class in org.hkijena.jipipe.ui.components
 
DataPreviewControlUI() - Constructor for class org.hkijena.jipipe.ui.components.DataPreviewControlUI
 
DataRowQueryExpression - Class in org.hkijena.jipipe.extensions.expressions
Expression for selecting rows inside a data table
DataRowQueryExpression() - Constructor for class org.hkijena.jipipe.extensions.expressions.DataRowQueryExpression
 
DataRowQueryExpression(String) - Constructor for class org.hkijena.jipipe.extensions.expressions.DataRowQueryExpression
 
DataRowQueryExpression(DataRowQueryExpression) - Constructor for class org.hkijena.jipipe.extensions.expressions.DataRowQueryExpression
 
DataRowQueryExpression.VariableSource - Class in org.hkijena.jipipe.extensions.expressions
 
DatasetEnumItemInfo() - Constructor for class org.hkijena.jipipe.extensions.r.algorithms.ImportRDatasetAlgorithm.DatasetEnumItemInfo
 
DatasetImageJ2ModuleInput - Class in org.hkijena.jipipe.extensions.imagej2.io.data.input
Handling of Dataset It is assumed that these refer to images (conversion to ImageJ2DatasetData)
DatasetImageJ2ModuleInput() - Constructor for class org.hkijena.jipipe.extensions.imagej2.io.data.input.DatasetImageJ2ModuleInput
 
DatasetImageJ2ModuleOutput - Class in org.hkijena.jipipe.extensions.imagej2.io.data.output
Handling of Dataset It is assumed that these refer to images (conversion to ImageJ2DatasetData)
DatasetImageJ2ModuleOutput() - Constructor for class org.hkijena.jipipe.extensions.imagej2.io.data.output.DatasetImageJ2ModuleOutput
 
DataSlicer - Class in org.hkijena.jipipe.extensions.utils.algorithms
 
DataSlicer(JIPipeNodeInfo) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.DataSlicer
 
DataSlicer(DataSlicer) - Constructor for class org.hkijena.jipipe.extensions.utils.algorithms.DataSlicer
 
DataSlotModuleInput<ModuleDataType,JIPipeDataType extends JIPipeData> - Class in org.hkijena.jipipe.extensions.imagej2.io.data.input
 
DataSlotModuleInput() - Constructor for class org.hkijena.jipipe.extensions.imagej2.io.data.input.DataSlotModuleInput
 
DataSlotModuleIO - Interface in org.hkijena.jipipe.extensions.imagej2.io.data
 
DataSlotModuleOutput<ModuleDataType,JIPipeDataType extends JIPipeData> - Class in org.hkijena.jipipe.extensions.imagej2.io.data.output
 
DataSlotModuleOutput() - Constructor for class org.hkijena.jipipe.extensions.imagej2.io.data.output.DataSlotModuleOutput
 
DataSourceNodeTypeCategory - Class in org.hkijena.jipipe.api.nodes.categories
 
DataSourceNodeTypeCategory() - Constructor for class org.hkijena.jipipe.api.nodes.categories.DataSourceNodeTypeCategory