Please cite following publication if you use our framework:

Ruman Gerst, Zoltan Cseresnyes, Marc Thilo Figge. JIPipe: Visual batch processing for ImageJ, 11 May 2022, PREPRINT (Version 1) available at Research Square []


JIPipe was developed by Research Group Applied Systems Biology - Head: Prof. Dr. Marc Thilo Figge

HKI-Center for Systems Biology of Infection

Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Insitute (HKI)

Adolf-Reichwein-Straße 23, 07745 Jena, Germany