Tutorials

Are you new to JIPipe? Do you want to find out what this tool is about? Then watch our video abstract:

Tutorial list

You will find text and video tutorials in the following list. All tutorials are also available as playlist on YouTube.

• Image analysis pipeline

This step-by-step tutorial explains how to create an image analysis workflow with simple algorithms like Gaussian blur, auto thresholding, and distance transform watershed. The segmented objects are quantified and plots are genereated.

• Image analysis pipeline (Video)

This step-by-step video tutorial explains how to create an image analysis workflow with simple algorithms like Gaussian blur, auto thresholding, and distance transform watershed. The segmented objects are quantified and plots are genereated.

• Creating an extension

This step-by-step tutorial explains how to create an JIPipe extension from parts of an existing pipeline without the need for programming.

• JIPipe for ImageJ users (Video)

This video explains the basics of creating pipelines in JIPipe - aimed towards users already familiar with ImageJ.

• User interface (Video)

This video explains the basics of the JIPipe user interface.

• Data caches (Video)

This video explains the basics of the caching system.

• Graph editor user interface (Video)

This video explains the basics of the graph editor user interface.

• How to do batch processing (Video)

This video explains how to create a batch processing pipeline.